Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DBEF8C Cluster: UPI0000DBEF8C related cluster; n...    36   0.92 
UniRef50_Q6LFN7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  
UniRef50_Q6LFG7 Cluster: Putative uncharacterized protein; n=2; ...    33   8.6  

>UniRef50_UPI0000DBEF8C Cluster: UPI0000DBEF8C related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBEF8C UniRef100 entry -
           Rattus norvegicus
          Length = 256

 Score = 35.9 bits (79), Expect = 0.92
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 285 INK*TLEYKRIAFHISLNVRNYVFACFHIYIIKYCT*YVCI*R-RIE---FSSVKKISFG 452
           INK T  Y  I  HI  +   Y++ C +IYI  Y   Y+C+   R E     S KK  FG
Sbjct: 103 INKYTQIYVYIHIHIHTHTYVYIYVCVYIYIYIYILLYICLYTLRFERPWVYSFKKCVFG 162

Query: 453 I 455
           +
Sbjct: 163 V 163


>UniRef50_Q6LFN7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 470

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/40 (50%), Positives = 24/40 (60%)
 Frame = -1

Query: 476 NIYVCLYNAKTNFLNRAKFDSSSDTNILCTIFYYINMKTS 357
           NI + LYN KTN +N+  FD  S+ NI      YIN KTS
Sbjct: 154 NISMPLYNYKTNEMNKLSFD-ISNMNISPMNQKYINKKTS 192


>UniRef50_Q6LFG7 Cluster: Putative uncharacterized protein; n=2;
            Eukaryota|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 2017

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -3

Query: 384  ILLYKYENKQKRNSVRLSLYERQYVCILMFIYLL*IMKKKHLNSTKYSYYRYVCNIQLN 208
            ILL K  NK  +N + L      Y+  + +IY     + K+ NST Y Y  Y+ N  +N
Sbjct: 955  ILLLKILNK--KNKLLLYTQHNNYILHIFYIY----KQNKNYNSTNYQYDNYLLNKDIN 1007


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,339,341
Number of Sequences: 1657284
Number of extensions: 12072715
Number of successful extensions: 25119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25100
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)