Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.9  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   7.7  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   7.7  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 196 VLDLI*LYVAHISIVRVFCGV 258
           +L L+ LY+A IS+ R++CG+
Sbjct: 177 LLSLVLLYIASISLGRIYCGM 197


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -1

Query: 470  YVCLYNAKTNFLNRAK----FDSSSDTNILCTIFY 378
            Y C+ N     L + K    ++ +SD NILC+ FY
Sbjct: 2406 YCCVVNVNGKILVKDKLSRIYNENSDENILCSCFY 2440


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 677  RLRSTFHKDPC-SHYKAFYGRVT*ALISAGPVRHMLINSTNSYVDSSTRFRK 525
            RL S F++  C S+ + F+   T  +       ++ INS N +VD S++ +K
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFSTDTYVIFFEPNTENVYINSYNLWVDQSSQSKK 1113


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 14  SLHCYFTSYAMCRQKINTLVIYQ*LTVRRTITCNSNTFAMNYATFFLPKTEIKNH 178
           +L+ Y  S+A+       L++ +       I C       NY TFF P+  +K +
Sbjct: 352 TLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVENYDTFFAPQMSLKGY 406


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 107 TCNSNTFAMNYATFFLPKTEIKNHLS 184
           TC    FA + A+F  P T++  HLS
Sbjct: 118 TCKGLLFAEDNASFHRPFTDVSAHLS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,077
Number of Sequences: 5004
Number of extensions: 57836
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)