Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0075 - 20525996-20526073,20527084-20527170,20527700-205278...    29   2.6  
07_01_0778 - 6009290-6010287,6010351-6010444                           28   6.0  

>03_05_0075 -
           20525996-20526073,20527084-20527170,20527700-20527818,
           20527983-20528221,20528324-20528380,20528506-20529131
          Length = 401

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/66 (22%), Positives = 33/66 (50%)
 Frame = -2

Query: 571 LILRIVTWIVPRASGNYYYHILLRCSKTGVHKIYMYVCTMPKLIFLTELNSILRQIQTYY 392
           L+L +  W++  A    Y     RC +T     +M    +P+ + L+  ++++  ++T+Y
Sbjct: 127 LVLSLSWWVIVAAQF-VYIAASKRCRRTWTGFSWMAFSGLPEFLKLSTASAVMLCLETWY 185

Query: 391 VQYFII 374
            Q  I+
Sbjct: 186 FQILIL 191


>07_01_0778 - 6009290-6010287,6010351-6010444
          Length = 363

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/58 (39%), Positives = 29/58 (50%)
 Frame = -2

Query: 568 ILRIVTWIVPRASGNYYYHILLRCSKTGVHKIYMYVCTMPKLIFLTELNSILRQIQTY 395
           ILR V  +    SG   YH+  R    GVHKI +YV    K  FL E +S++  I  Y
Sbjct: 128 ILRRVCSLSQTQSG--LYHVAQR---GGVHKITLYVMNYVK--FLWEHDSVINNIIAY 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,666
Number of Sequences: 37544
Number of extensions: 287474
Number of successful extensions: 537
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)