Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)                   33   0.28 
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 28   6.1  

>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
          Length = 1826

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = +1

Query: 7    EVFSPLLFY-----FICYVSPEN*YSCNLPIIN 90
            E+ SP++FY      +C +SP N Y C +P+IN
Sbjct: 1584 EICSPIMFYPHQSVSLCVISPINRYPCGVPLIN 1616


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 119 NTFAMNYATFFLPKTEIKNHLSK 187
           NTFA+ Y TF LP++  K+ + K
Sbjct: 246 NTFALLYVTFILPESRAKHVMEK 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,994,448
Number of Sequences: 59808
Number of extensions: 387705
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)