Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucos...    27   9.4  
U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucos...    27   9.4  
U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucos...    27   9.4  
DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide glyc...    27   9.4  
DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide glyc...    27   9.4  
DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide glyc...    27   9.4  

>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 339 VRNYVF-ACFHIYIIKYCT*YVCI*RRIEFSSVKKISFGIVQTYIYIL*TPVLL 497
           V+ Y++     ++I K  + ++CI   I  SS+  I+FGIV T I    TP+++
Sbjct: 229 VQKYIYWQTLTVFICKLQSVFLCIYLFIRASSITDITFGIVLTDIVT--TPLIV 280


>U53332-9|AAO38632.1|  392|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform d protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 300 LIMAFSLNHLVGLNIMPILILHTIYWFSM 328


>U53332-8|AAL32224.1|  459|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform a protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 367 LIMAFSLNHLVGLNIMPILILHTIYWFSM 395


>U53332-6|AAL32225.1|  470|Caenorhabditis elegans Ceramide glucosyl
           transferase protein3, isoform b protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 378 LIMAFSLNHLVGLNIMPILILHTIYWFSM 406


>DQ178634-1|ABD75713.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 378 LIMAFSLNHLVGLNIMPILILHTIYWFSM 406


>DQ178633-1|ABD75712.1|  470|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 378 LIMAFSLNHLVGLNIMPILILHTIYWFSM 406


>DQ178632-1|ABD75711.1|  392|Caenorhabditis elegans ceramide
           glycosyl transferase protein.
          Length = 392

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LVL*ICVQHTIKLNLTPILFTQMIFYFSL 158
           L++   + H + LN+ PIL    I++FS+
Sbjct: 300 LIMAFSLNHLVGLNIMPILILHTIYWFSM 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,660
Number of Sequences: 27780
Number of extensions: 311412
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)