Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.3  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 550 WIVPRASGNYYYHILLRCSKTGVHKIYMYV 461
           WI    +   +  ++ RC+K GV +IY+ V
Sbjct: 87  WITRSGTREQFIDMVARCNKAGV-RIYVDV 115


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 439 KLVLALYRHTYIFYEHL 489
           KL    + HTYI YE L
Sbjct: 34  KLQPTYFHHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 439 KLVLALYRHTYIFYEHL 489
           KL    + HTYI YE L
Sbjct: 34  KLQPTYFHHTYIIYESL 50


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 437 LNRAKFDSSSDTNILCTIFYYIN 369
           L  A FD+ S+ N+  TI  Y+N
Sbjct: 67  LTIASFDAISEVNMDYTITMYLN 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,402
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)