Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0347
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ...    30   1.6  
At5g06810.1 68418.m00770 mitochondrial transcription termination...    29   2.2  
At5g42090.1 68418.m05124 expressed protein                             28   6.6  
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila...    28   6.6  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   6.6  
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    27   8.8  

>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); similar to fizzy-related
           protein (GI:5813825) Drosophila melanogaster,
           PID:g2326419;
          Length = 518

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 88  NSTTNNHLQQQYICYELCNIFFTKD*NK 171
           N+TTN HL     C ++CN+ ++K+ N+
Sbjct: 408 NTTTNTHLSSIDTCSQVCNLAWSKNVNE 435


>At5g06810.1 68418.m00770 mitochondrial transcription termination
            factor-related / mTERF-related contains Pfam profile
            PF02536: mTERF
          Length = 1141

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 317  CLSYKLKRTELRFCLFSYLYNK 382
            CL Y L+R +LRF +FS+L ++
Sbjct: 1076 CLKYTLQRMKLRFSMFSWLQDR 1097



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 317 CLSYKLKRTELRFCLFSYL 373
           CL + L+R +LRF +FS+L
Sbjct: 519 CLKFTLQRMKLRFAMFSWL 537


>At5g42090.1 68418.m05124 expressed protein
          Length = 439

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 372 KYENKQKRNSVRLSLYERQYVCILMFIYLL*IMKKKHLNSTKYSY 238
           K + K   N V+L+L+ + Y+ ++ +IY   ++       T Y Y
Sbjct: 341 KTDGKAAVNLVKLTLFRQYYIVVICYIYFTRVVVYALETITSYKY 385


>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
           to S-receptor kinase gi|392557|gb|AAA62232; contains
           Pfam domains PF00954: S-locus glycoprotein family,
           PF00069: Protein kinase domain and PF01453: Lectin
           (probable mannose binding)
          Length = 772

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 454 LYRHTYIFYEHLSYYTAIRCDNNNFLKRVELS 549
           +YR+ Y+F E   YYT  + +N + L R++L+
Sbjct: 222 IYRYEYVFTEEEVYYT-YKLENPSVLTRMQLN 252


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 273 KKKHLNSTKYSYYRYVCNIQLN 208
           K KHL  +KY YY   CN++ +
Sbjct: 50  KGKHLKRSKYYYYCATCNLEFH 71


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 670 DPHSIKTLVATIKLFTVALPKP*SRLAQ*GTC*LILRIVTWIVPRASGNYYYHIL 506
           D  S+ TL+    +FT  +P+    L       L   ++T  +PR  GN++  +L
Sbjct: 444 DETSLITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFFLEVL 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,371
Number of Sequences: 28952
Number of extensions: 261012
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)