Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0346
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   0.32 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.42 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.42 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.56 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +3

Query: 258  TRSVWTSSPTN*KRPVSSPRTLTENPTRFRENWPSLKTNSKSPKTVSSLVTLRSQ 422
            T S W ++ T  +   + P T +        NWP+  T    P  V   V   SQ
Sbjct: 1047 TTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPSQ 1101


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 20/92 (21%), Positives = 41/92 (44%)
 Frame = +2

Query: 236  VGEQGTEDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDXK 415
            +G    +DE  ++   N+L +  +    AD K +E  RK   +++ L     +++S + K
Sbjct: 1066 LGANAQDDEGGLEFSVNKLFKCMICTYKADNKENEQLRK---IQESLRDLNRKIESLE-K 1121

Query: 416  ISELEEELKVVGNSLKSLEVSEEKANQRVEES 511
            +   +     V N    +E S+      VE++
Sbjct: 1122 MQYPDLRSPAVSNVTTFMEGSKATVKNNVEDN 1153


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 20/92 (21%), Positives = 41/92 (44%)
 Frame = +2

Query: 236  VGEQGTEDEERMDQLTNQLKEARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDXK 415
            +G    +DE  ++   N+L +  +    AD K +E  RK   +++ L     +++S + K
Sbjct: 1066 LGANAQDDEGGLEFSVNKLFKCMICTYKADNKENEQLRK---IQESLRDLNRKIESLE-K 1121

Query: 416  ISELEEELKVVGNSLKSLEVSEEKANQRVEES 511
            +   +     V N    +E S+      VE++
Sbjct: 1122 MQYPDLRSPAVSNVTTFMEGSKATVKNNVEDN 1153


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 276 SSPTN*KRPV-SSPRTLTENPTRFRENWPSLKTNSKSPKTVSSLVTLRSQS 425
           +SPT    P  SSPR+++E+P   R+  P+ + NS+  ++  SLV  R  S
Sbjct: 53  ASPTPGDVPTPSSPRSISEDPLNCRD-LPNSRCNSR--ESSDSLVQPRCPS 100


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -3

Query: 644 CQSSFFGSPVRTSLLQVSLTVFLGRTRHGPRPPSACRIRVLSC 516
           C   F   P+  S+   S+ V +  T HG  P S+     +SC
Sbjct: 134 CDQGFAQQPMFPSM---SVNVSMNMTMHGYHPSSSYPANEISC 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,435
Number of Sequences: 336
Number of extensions: 1933
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)