Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0346
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              22   4.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              22   4.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 308 GDGPLSIGW*AGPYAPRPLCPVL 240
           GD PL+I W     +P PL P L
Sbjct: 637 GDPPLTISWLKDGQSPFPLPPNL 659


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   GTREDLILNKNKLEQANKDLEEKEK 76
           GT +DLIL K       KD+ EK K
Sbjct: 44  GTTKDLILVKKSTAHFVKDIYEKYK 68


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 23  LNKNKLEQANKDLEEKEKQLTATEAEVAALNRKVQQ 130
           +NK +   + K+   K+++ TAT  +    +RK Q+
Sbjct: 777 VNKEQSPNSTKETTPKKERKTATTTQPVISSRKEQK 812


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 397 DTVFGDFEFVFNEGQFSRNLVGFSVSVLGEETGLFQLVGE 278
           + +   F  V   G F  N+V    S+  +E  + +LV E
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAE 103


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 397 DTVFGDFEFVFNEGQFSRNLVGFSVSVLGEETGLFQLVGE 278
           + +   F  V   G F  N+V    S+  +E  + +LV E
Sbjct: 64  ECILKQFNIVDESGNFKENIVQELTSIYLDENVIKKLVAE 103


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 257 DEERMDQLTNQLKEARLLAEDADGKSD 337
           D  R+D + +  ++ARLL E +  ++D
Sbjct: 218 DGFRIDAINHMFEDARLLDEPSANRTD 244


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
 Frame = -2

Query: 510 DSSTRWLAFS--SDT 472
           D STRW+AF+  SDT
Sbjct: 116 DLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
 Frame = -2

Query: 510 DSSTRWLAFS--SDT 472
           D STRW+AF+  SDT
Sbjct: 116 DLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/15 (66%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
 Frame = -2

Query: 510 DSSTRWLAFS--SDT 472
           D STRW+AF+  SDT
Sbjct: 116 DLSTRWIAFNCLSDT 130


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -1

Query: 223 RLFSSA-DCWASSSFCWAV 170
           R F+SA D W+    CW V
Sbjct: 813 RKFTSASDVWSMGIVCWEV 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,543
Number of Sequences: 438
Number of extensions: 2770
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)