Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0345
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 29 0.83
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 1.9
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.5
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 4.4
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 5.9
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 26 5.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 5.9
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 5.9
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 5.9
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 26 5.9
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 25 7.8
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 7.8
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 7.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 7.8
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.83
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +3
Query: 393 EDHIDSHVDETNEESDVVVNKLEEK---GRFARMFQSIRDKETLVWGRAKSLKRKL 551
E H+DS ++ + +ES VNK+EEK + + Q I+ K +L +S+ K+
Sbjct: 76 ESHVDSEIETSKDESS--VNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEKV 129
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 210 IARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQA 371
I T S +IT+ S+ S S + S + + + +S KSS + ++K+ +
Sbjct: 137 IGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSS 190
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -1
Query: 287 FTFLVTVLTVSGLSCDISGTWSSSCNMGVLGSGEFAISTTLSGTVKIFVTSSRSPFAFA 111
FT++ T+ S + ++ G+W+ CN + ++ S+ T F ++ PF ++
Sbjct: 690 FTYMTTLTKSSCRALELKGSWNFHCNTYLDNLSDYKFSSDAGET--YFEKAAPHPFVYS 746
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 264 KHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEES 437
KH++EK ET + E + + + K S + K +K V P S ++ + +E++
Sbjct: 419 KHNEEKVETPKPEAQPV--SKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDN 474
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 2.5
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 276 EKSETGQSENETITCASDKSSPQAG-KTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVN 452
EK T N++ A S+ + K K ++ PI+ D + + + E +VVN
Sbjct: 954 EKDATLYRHNDSDASAYVSSARRRDFKEEKIESAPPIINDIDSEIASLKKRIHEKSLVVN 1013
Query: 453 KLEEKGRFARMFQSIRDKETLVWGRAKSLKRKL 551
LE+K A +++ ++L++ R KS++ ++
Sbjct: 1014 ALEDKKLAATPANDVQN-DSLIY-RIKSVQDEI 1044
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 201 FRQRGICNFDYFIRNGQNLCDIIAQPFCICFRFVNYFF 88
FR++ DY ++N +++ + +PF R+V +FF
Sbjct: 289 FREQVAWIIDYLLKNRRDIDAELYEPFQTAVRYVVHFF 326
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +3
Query: 201 NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSEN-----ETITCASDKSSPQAGKTAKT 365
NT +A + SR SA S+ S KS + ET+ + D +P+ K
Sbjct: 111 NTSVAGSDSVSRDKIPFSASSRASSTKSTLSSVKETDFVTETLILSPDNQAPRMSFVGKP 170
Query: 366 QAVMPIVRSEDH 401
+V IVR+ H
Sbjct: 171 NSVAEIVRTVMH 182
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 5.9
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Frame = +3
Query: 183 KFPAA*NTHIARTTPRSRYITTQSAHSKHS---------DEKSETGQSENETITCASDKS 335
K PA ++ + + RS++ +HSKH+ + + +ET T +++
Sbjct: 551 KHPALHSSRPSDSRSRSKFGNDYQSHSKHNLFRKNSFPKRRRLSNSDTPSETTTPNNEQE 610
Query: 336 --SPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFA 479
S QA K + + + S + + + EE + K EEK R A
Sbjct: 611 QVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRLA 660
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 378 PIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAKSLKRK 548
P + E + +S E+ E+ D ++NK +++G+ MF + E ++ KR+
Sbjct: 34 PRTKEEGYYES---ESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRR 87
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 231 SRYITTQSAHSKHSDEKSETGQSENETITCA-SDKSSPQ 344
S+Y Q K DE+ + QS N T T A SD +SPQ
Sbjct: 453 SKYFKLQKNTEKEIDEQVPS-QSNNTTPTSAKSDSASPQ 490
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 155 PFLIK*SKLQIPRCLKHPYCKNYSTFPIYHNSVR 256
P LI S++ + +KH YC F HN VR
Sbjct: 191 PTLIAKSRVFFGQLMKHFYCLQLQMFRKMHNIVR 224
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 351 KTAKTQAVMPIV-RSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKETLV 518
++A TQ P +E+ D +D ++ NK+ GR +R+F +R++ V
Sbjct: 413 ESAPTQHKQPAPSENENKADQEID-IEARRQIIKNKIMAIGRISRVFSVLREERESV 468
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 348 GKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRD 503
G+ K + + +S+ I S +DE S + K + RF+R+ ++ RD
Sbjct: 99 GRKPKNISTLEHDKSKPVISSLIDEDANLSQIKARKSVLESRFSRLEEAFRD 150
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.4 bits (53), Expect = 7.8
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 216 RTTPRSRYITTQSAHSKHSDEKSET-GQSENETITCASDKSSPQAGKTAKTQAVMPIVRS 392
R P S+ + S+ SKH +T G+ E+ T D S + KTQ +
Sbjct: 78 RQKPTSK--KSASSTSKHDSTGVKTSGKRSRESSTVTVDGDSHELPSRIKTQKSESPIPQ 135
Query: 393 EDHIDSHVDETNEES 437
+ D D NEE+
Sbjct: 136 QVKRDGTTDAKNEET 150
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = +3
Query: 201 NTHIARTTPRSRYITTQSAHSKHSD-----EKSETGQSENETITCASDKSSPQAGKTAK 362
N +++TTP +TT+S + D E+ T + N I + KS K+AK
Sbjct: 188 NNAMSKTTPAPPLVTTKSISADQDDFYTCKEEVSTYEGLNSQIELSPVKSRDSQNKSAK 246
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +3
Query: 243 TTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDE 422
T S +K +D S ++EN + SD + + + ++ PIV + D +
Sbjct: 363 TATSLQNKSTDYGSVKRKTEN--LNSDSDIQNKRTKSIEENNSLPPIVSTNGITDGDTEM 420
Query: 423 TNEESDVVVNKLEE 464
+ +V++N E
Sbjct: 421 QESKKNVIINGFNE 434
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 148 ILTVPDKVVEIAN-SPLPKTPILQELLHV-PDISQLSPLTVSTVTRKVKQASPK 303
+L V + N SPLPKTP L+V P S +P +V +S K
Sbjct: 588 LLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLSSSK 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,906
Number of Sequences: 5004
Number of extensions: 49338
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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