Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0345
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0989 + 10048036-10048125,10048232-10048816,10048930-100493... 33 0.28
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 31 1.1
06_03_1053 + 27224824-27225618 31 1.1
11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635 29 2.6
04_04_1270 - 32278793-32279095,32279177-32279327,32279427-322796... 29 2.6
07_03_0103 - 13425411-13425713,13425874-13425974,13426410-134264... 29 3.5
05_07_0269 - 28837918-28838075,28840443-28840551,28840774-28841910 29 3.5
12_02_0346 - 17776871-17781445 28 6.0
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 6.0
05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682... 28 8.0
>12_01_0989 +
10048036-10048125,10048232-10048816,10048930-10049331,
10049419-10049477,10049711-10049801,10050243-10050329,
10050723-10050791
Length = 460
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 168 SSRNCKFPAA*NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQA 347
+SR + ++H+ R + T+QSAH K + + E G+++NE+ + +
Sbjct: 369 TSRTSQLEEQRSSHVTRVKEKLFGFTSQSAHQKANTPRKEKGKTQNESFKARPLPNFYRR 428
Query: 348 GKTAK 362
K AK
Sbjct: 429 NKQAK 433
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +3
Query: 204 THIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPI 383
TH + R +S+HS S + +S + A D+S+PQ +T++T + +
Sbjct: 257 THSSDEVEDRRTSFHESSHSSKRQSMSNSSRSSRKEDIVAFDESNPQGRRTSRTGSSIES 316
Query: 384 VRSEDHIDS 410
ED D+
Sbjct: 317 NHVEDKEDT 325
>06_03_1053 + 27224824-27225618
Length = 264
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +3
Query: 312 ITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQ 491
+T + ++ +AG A + +D DSH D + EE GR R ++
Sbjct: 122 LTASLKEALVKAGGRAPKLETIQEEEDDDDDDSHGDSKRRRKAAAAAEEEECGRGRRQYE 181
Query: 492 SIRDKETLVWGRAKSL 539
+RD+ L+ ++L
Sbjct: 182 EMRDRYPLLVAEVEAL 197
>11_03_0098 - 9981374-9981414,9982091-9982305,9982334-9982635
Length = 185
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 342 ED*IYPMRMLLFRFRTGLFHFSRHCAY 262
ED +YP RM RF+ G FS HC +
Sbjct: 73 EDPLYPERMFRTRFQMGRPLFSTHCEF 99
>04_04_1270 -
32278793-32279095,32279177-32279327,32279427-32279664,
32279778-32279988,32280067-32280248,32280332-32280448,
32280828-32282094
Length = 822
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -1
Query: 296 LACFTFLVTVLTVSGLSCDISGTWSSSCNMG-VLG--SGEFAISTTLSGT 156
+AC FL+ +L +S CD T + + G VLG SG FA+ GT
Sbjct: 3 MACLPFLICLLLISFCKCDDQLTQAKQLHPGDVLGSKSGVFALGFFSPGT 52
>07_03_0103 -
13425411-13425713,13425874-13425974,13426410-13426471,
13426951-13427123
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 372 VMPIVRSEDHIDSHVDETNE 431
+ P EDH+DSH+ E NE
Sbjct: 184 IFPDATQEDHVDSHLPENNE 203
>05_07_0269 - 28837918-28838075,28840443-28840551,28840774-28841910
Length = 467
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 127 LRDDVTKILTVPDKVVEIANSPLPKTPILQELLHVPDISQ 246
+RD +I++V DK +E+ ++P P + +LH P +++
Sbjct: 425 IRDKGLEIVSVHDKGLEVNSAPEPTDQVEAAVLHKPKVNK 464
>12_02_0346 - 17776871-17781445
Length = 1524
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 291 GQSENETITCASDKSSPQAGKTAKTQAVMP 380
G +E TIT SP A K AKT +P
Sbjct: 1139 GVAEQRTITTPESSLSPSANKAAKTLTTIP 1168
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Frame = +3
Query: 249 QSAHSKHSDEKSETGQSENETITCA---SDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVD 419
QS +KH + E E + + S K + ++ + + S +
Sbjct: 475 QSEMTKHKEASLELNSLRAEVHSLSRILSRKERDNEEASCRSARAGSDITQLQSVISDLK 534
Query: 420 ETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAKSLKRKL 551
+TN+E + + + + +R RD+E L W +LK L
Sbjct: 535 QTNKELKLFADMYKRESTDSREIMESRDREFLEWAHVHALKSSL 578
>05_04_0256 - 19465636-19466709,19467649-19467765,19468168-19468279,
19469019-19469167,19469378-19469449,19469544-19469609,
19471945-19472073,19474539-19474647,19475225-19475304,
19475408-19475533,19475607-19475657,19475738-19475920,
19476019-19476105,19476184-19476294,19476692-19476796,
19477513-19477678,19477769-19477941,19478022-19478094,
19479472-19479655,19479759-19480203
Length = 1203
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +3
Query: 249 QSAHSKHSDEKSETGQSENETITCASDKSSPQ----AGKTAKTQAVMPIVRSE---DHID 407
Q + +K KSE Q + + + + SS Q A +A+ + P+ +E + +
Sbjct: 860 QKSDTKSQASKSENKQGKLKKPKPSQEGSSSQLTQPANSSARASSSRPLTAAERQRERLQ 919
Query: 408 SHVDETNEESD 440
+DE NEESD
Sbjct: 920 KMMDEMNEESD 930
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,582
Number of Sequences: 37544
Number of extensions: 291531
Number of successful extensions: 961
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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