Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0345
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 31 0.66
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47) 31 1.2
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 29 2.7
SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36) 29 3.5
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 29 4.7
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23) 29 4.7
SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38) 29 4.7
SB_47383| Best HMM Match : LON (HMM E-Value=1.3) 28 6.2
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_1335| Best HMM Match : E-MAP-115 (HMM E-Value=1.6) 28 6.2
SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38) 28 6.2
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 6.2
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08) 28 8.1
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 28 8.1
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8) 28 8.1
SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4) 28 8.1
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/88 (18%), Positives = 41/88 (46%)
Frame = +3
Query: 243 TTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDE 422
T+ K D++ Q +NE+++ + + K ++ + +SE+H + +
Sbjct: 197 TSFKIREKRMDQEKVLLQKQNESLSAELKAKTEELATIRKEKSRDQLAKSEEHFKNELAS 256
Query: 423 TNEESDVVVNKLEEKGRFARMFQSIRDK 506
+ +D+ ++ EE + A+ Q+ D+
Sbjct: 257 QSRLADLYKDESEESKKRAKEMQTAMDE 284
>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
Length = 626
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = +3
Query: 201 NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMP 380
+T RTT S Y T A + S KS + I S S + G ++ P
Sbjct: 95 STFKPRTTSSSYYPPTSMATLRASRSKSPVRSTS--PILGRSSSPSRRGGSPSRILNSSP 152
Query: 381 IVRSEDHIDSH---VDETNEESDVVVNKLEEKGRFARMFQSIRD 503
+ S+ +D V E +++ +L+++ RF+ + +RD
Sbjct: 153 LSPSKQVVDGDNDTVQRQRRELQLLIGELKDRDRFSHWKKDVRD 196
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 204 THIARTTPRSRYITTQSAHSKHSDEKS-ETGQSENETITCASDKSSPQAGKTAKTQAVMP 380
TH AR++ + + S H+KHS S T Q + ++ + + + T Q V
Sbjct: 129 THHARSSCHTTHSARSSCHTKHSTRSSCHTTQPCKKQLSHNTPCTEKLSHNTLPLQRV-- 186
Query: 381 IVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAKSLKRKL 551
V +H S D T + + + K + + S+ T + G A+ L+R+L
Sbjct: 187 AVTQHNHAKSSCDTTEPCKEKLSHNTLCKEKLSHNTPSL-SHNTTMQGSAEGLRRRL 242
>SB_59345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 213 ARTTPRSRYITTQSAHSKHSDEKSET----GQSENETITCASDKSSPQAGKTAKTQAVMP 380
A PR+ Y Q++H + +KSET ++ T + K Q G T K +VM
Sbjct: 205 ASPAPRACYGCGQTSHIRDCPKKSETTKWCNYHKSSTHSDGECKRHQQKGDTTKKVSVMD 264
Query: 381 IVRSEDHIDSHVDETNEESDVVVN 452
+ + + + + S+ V+N
Sbjct: 265 DTENNEEEHTFIFNVKDHSNKVLN 288
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 225 PRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAK---TQAVMPIVRSE 395
P+SR+ + A ++ ++G+ ENE+ A DK+ A T + +A + R
Sbjct: 399 PKSRFGKFKWARKDDKKDEGDSGEHENES-EKAEDKNEKPAEPTKEGVPAEAKLSKPRLS 457
Query: 396 DHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKET 512
D+ +E+ + +K K F ++ + DKET
Sbjct: 458 KFKKRKADKEHEKVEKKEDKDTSKPLFGKLRKKAGDKET 496
>SB_25695| Best HMM Match : PDEase_I (HMM E-Value=3.1e-36)
Length = 646
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 166 KVVEIANSPLPKTPILQELLHVPDIS 243
KV +A SP+ ++Q LLHV DIS
Sbjct: 570 KVALVAGSPIENREVVQLLLHVADIS 595
>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2174
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +3
Query: 207 HIARTTPRSRYITTQSAHSKHSDEKSETGQSENETI-----TCASDKSSPQAGKTAKTQA 371
H+A T S T SA ++ S E+ + E + + +D SP +T++ +A
Sbjct: 657 HLA--THESTETTQPSADAQGSVERCSLSREEAAVVVDHDTSPVTDALSPM--ETSQIEA 712
Query: 372 VMPIVRSEDHIDSHVDETNEESDVVVNKLE 461
V ++ E+ D H+D EES ++E
Sbjct: 713 VADELQEEEDEDDHIDAVEEESPDAPEEIE 742
>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 187 SPLP-----KTPILQELLHVPDISQLSPLTVSTVTRKVKQASPKT 306
SP+P K PI +L H+P + T + T +V+ +SPKT
Sbjct: 304 SPIPTCLAGKVPISPDLAHIPRTPGETSATSGSETSQVRTSSPKT 348
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Frame = +3
Query: 246 TQSAHSKHSDEKSETGQSENETITCA-SDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDE 422
T SA S S E + SD+ S G +T +MP RS D + H
Sbjct: 1052 THSAGSSLSSSAQELAHARRRGYANGESDRDSGHGGSEIET-VMMPSHRSHDDVSRHNPV 1110
Query: 423 TNEESDVVVNKLEEK 467
+ SD+ L K
Sbjct: 1111 SRANSDITTMMLNSK 1125
>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
Length = 487
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -1
Query: 356 CLPSLRTRFIRCACYCFV---FGLACFTFLVTVLTVSGLSCDI 237
C+PSL T +R + V F + C T + T L V G C +
Sbjct: 271 CIPSLTTHLLRHSRITHVTPSFFVTCLTSMKTYLQVIGFQCSV 313
>SB_19168| Best HMM Match : rve (HMM E-Value=3.9e-38)
Length = 586
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 327 DKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETN-EESDVVVNKLEEKGRFARMFQSIRD 503
D S+ + A+ + + ++ +D+ D ++N +E D+VV + E KG+ F+ +
Sbjct: 424 DYSAAAIPEVARKRDMEYKLKMKDYADKKAADSNIQEGDIVVMRNETKGKLQPNFRPEKY 483
Query: 504 KETLVWGRAKSLKRK 548
K T + G K ++ K
Sbjct: 484 KVTNLNGPDKIVQSK 498
>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
Length = 1528
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 231 SRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQ 344
S +TTQS+ S E S+ Q+E+ T ++ SPQ
Sbjct: 597 SSAMTTQSSERGTSSELSDNPQAESANATAVLEQESPQ 634
>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1199
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 213 ARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRS 392
A+ +R +T S S HS + SET +E S K P+ G + +T P+ S
Sbjct: 648 AKEAKENRAASTSSPTSSHSSQNSETVLAERPD---TSQKHEPKEGASEETPR-SPVQAS 703
Query: 393 ED 398
E+
Sbjct: 704 EE 705
>SB_1335| Best HMM Match : E-MAP-115 (HMM E-Value=1.6)
Length = 182
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 273 DEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHI---DSHVDETNEESDV 443
D T + E E T K++ + +T + + I R + + +S +DET EE+ +
Sbjct: 91 DATGNTLREEEERNTEQMRKNNEERSETTNQERLRAIDRKNEELSERNSVIDETLEENQL 150
Query: 444 VVNKLEEK 467
LEEK
Sbjct: 151 ERENLEEK 158
>SB_54614| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-38)
Length = 1935
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 180 CKFPAA*NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTA 359
C+ H R ++ ++ + E + QS+ + KSSP AG TA
Sbjct: 746 CRIEVCDKKHSTFLHKREERAKSKEKENEQTSENAAHAQSKPSNGYVQTFKSSPSAG-TA 804
Query: 360 KTQAVMPI-VRSEDHIDS 410
++P+ VR++ HI S
Sbjct: 805 IGPPIVPVHVRAKGHISS 822
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 237 YITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSED 398
Y+ + K + K + N+T T S P GKT TQ V+P V S D
Sbjct: 3894 YLDAKKQLEKDNSSKQTHKEPSNQTHT--SQLVVPNIGKTESTQLVIPDVGSGD 3945
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 624 ETYFITQYFLQKYYYSSNHINNSPTTFSSM--TLPFPIQE 511
E Y + Q F + Y +H N TFS M LPF I E
Sbjct: 571 ENYAVGQEFYRVQAYDKDHGTNGEITFSFMQNDLPFSINE 610
>SB_18748| Best HMM Match : F5_F8_type_C (HMM E-Value=2.3e-08)
Length = 398
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -1
Query: 377 HNGLCFSCLPSLRTRFIRCACYCFVFGLACFTFLVTVLTVSG 252
H G C+ PS R RCAC G AC ++ LTV G
Sbjct: 122 HGGTCY---PSYRDGDFRCACPPLYAGKACQKCII-YLTVHG 159
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 432 ESDVVVNKLEEKGRFARMFQSIRDKET 512
E+ V +LEEKGRF+++ ++ D T
Sbjct: 251 EAMTVCGELEEKGRFSKIVDALHDDHT 277
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 127 LRDDVTKILTVPDKVVEIANSPLPKTPILQELLHVPDISQLSPLTVSTVTRKVKQA 294
LRD T + TV D ++ + +PIL + ++PD + + + +V VK+A
Sbjct: 1351 LRDISTMVDTVMDVLINLKPFSNNLSPILATIKNLPDCGEAKKIFLESVKPCVKKA 1406
>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
Length = 623
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = -3
Query: 618 YFITQYFLQKYYYSSNHINNSPTTFSSMTLPFPIQEFPCLVLTETS 481
Y+ QY+ +YY + + N T S+T P + ++ C + TS
Sbjct: 214 YYCNQYYCNQYYCNQYYCNQYYCT--SITAPVLLHQYYCTSIIATS 257
>SB_23985| Best HMM Match : CRAM_rpt (HMM E-Value=3.4)
Length = 323
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +3
Query: 243 TTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDE 422
+ +S S SDE +E+ +S + SDKS+ ++ K+ ++ S++ +S+ +
Sbjct: 104 SNESDESNESDESNESDESNESDKSNESDKSN-ESDKSNESDKRNESDESDEDDESNGSD 162
Query: 423 TNEESD 440
+ ESD
Sbjct: 163 ESNESD 168
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,282
Number of Sequences: 59808
Number of extensions: 367880
Number of successful extensions: 1427
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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