Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0345
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 31 1.0
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 31 1.0
Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical pr... 30 1.3
AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein. 30 1.3
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 30 1.3
Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral signa... 29 3.1
AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical ... 29 3.1
AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical ... 29 3.1
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 29 4.1
DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic mul... 29 4.1
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 29 4.1
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 29 4.1
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 29 4.1
AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical... 29 4.1
Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva ... 28 5.4
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 7.2
U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical pr... 28 7.2
U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 189 PAA*NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQ 368
P + I TT + TT + + +EK ET ++ + T GK+ KT+
Sbjct: 455 PVCCSNEITTTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTT---------VGKSKKTK 505
Query: 369 AVMPIVRSEDHIDSHVDETNEESD 440
A ED D +VD+ E ++
Sbjct: 506 ATTTTEEPEDDEDVYVDDDEEGTE 529
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +3
Query: 189 PAA*NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQ 368
P + I TT + TT + + +EK ET ++ + T GK+ KT+
Sbjct: 455 PVCCSNEITTTTTTTTTTTTLAPTTTTEEEKEETTETTEKVTT---------VGKSKKTK 505
Query: 369 AVMPIVRSEDHIDSHVDETNEESD 440
A ED D +VD+ E ++
Sbjct: 506 ATTTTEEPEDDEDVYVDDDEEGTE 529
>Z83113-1|CAB05543.1| 733|Caenorhabditis elegans Hypothetical
protein K08H10.1 protein.
Length = 733
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +3
Query: 246 TQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKT-QAVMPIV--RSEDHIDSHV 416
++S K D S +S +T A DK++ AGK + V ++ D DS
Sbjct: 412 SKSMTEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFK 471
Query: 417 DETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAK 533
+ + D V NK A + S +DK + W + K
Sbjct: 472 AHSTDSKDNVENKA------ADAYNSAKDKASDAWDKTK 504
>AF016513-1|AAB69446.1| 733|Caenorhabditis elegans Ce-LEA protein.
Length = 733
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +3
Query: 246 TQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKT-QAVMPIV--RSEDHIDSHV 416
++S K D S +S +T A DK++ AGK + V ++ D DS
Sbjct: 412 SKSMTEKIGDSISGAWESTKDTAVSAKDKTAEAAGKVGDSISGAYDTVKEKASDIADSFK 471
Query: 417 DETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAK 533
+ + D V NK A + S +DK + W + K
Sbjct: 472 AHSTDSKDNVENKA------ADAYNSAKDKASDAWDKTK 504
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 30.3 bits (65), Expect = 1.3
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +3
Query: 264 KHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDV 443
K SDE+ + SE E + + SP+ KT K AV E+ +S D EE +V
Sbjct: 328 KESDEEQQASDSEEEVVEVKKNSKSPK--KTPKKTAV-----KEESEESSGD---EEEEV 377
Query: 444 VVNKLEEKGRFARMFQSIRDKE 509
V K K + +S D+E
Sbjct: 378 VKKKKSSKINKRKAKESSSDEE 399
>Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical
protein F07B10.5 protein.
Length = 536
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 669 IKLFET*LGDLASNHETYFITQYFLQKYYYSSNHINNSPTTFSSMTL 529
I LF +G ++ TY YF QK+ H NNS F ++L
Sbjct: 91 IDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHFNNSGIGFRQLSL 137
>AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral
signaling target protein 2 protein.
Length = 661
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +3
Query: 219 TTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSP--QAGKTAKTQAVMPIVRS 392
T+ S + + + S+ + + E + ++E I S+ S+ ++ +T + + + S
Sbjct: 348 TSLASSALASPHSGSEENVSQIENEEGDDEAIGTNSNSSNEVTESPETIEEPDNVDMEES 407
Query: 393 -EDHIDSHVDETNEESD 440
E +D+H+DET ESD
Sbjct: 408 SESEVDTHIDETRNESD 424
>AF078788-7|AAC26958.1| 227|Caenorhabditis elegans Hypothetical
protein ZC190.8 protein.
Length = 227
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +3
Query: 183 KFPAA*NTHIARTTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAK 362
+FP N+H R I +S + K +D +E G N + + KSS ++ ++ +
Sbjct: 136 QFPHLDNSHQTEFKKSHRSIREKS-NRKSTDSSTELGSPTNSQYSTTTRKSSKKSTRSDR 194
Query: 363 TQAVMPIVRSEDHIDSHVDETNE 431
+H + D+T +
Sbjct: 195 KMEKTQRNEKSEHTEEQTDKTEK 217
>AC093703-3|AAL00866.2| 1319|Caenorhabditis elegans Hypothetical
protein Y20F4.4 protein.
Length = 1319
Score = 29.1 bits (62), Expect = 3.1
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Frame = +3
Query: 75 KGSD*RSNSQNGSKCKRAAR*CHKDFDRS**SSRNCKFPA-----A*NTHIARTTPRSRY 239
+G+ ++SQNG+ + H+ S K PA + N H +R+ R+
Sbjct: 300 RGAPSPASSQNGNLFRNGTGSQHRGSPTDFKSKAPAKPPAQNGNASHNEHRSRSRSRATV 359
Query: 240 ITTQSAHSKHSDEKSETG-QSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHI 404
+ S+H E + TG S +E+ + A+ + A +K A P R D I
Sbjct: 360 PRSAQYRSEHQTEHARTGSSSHHESRSRAAAAAPVGASSQSKPPAPSPTSRETDSI 415
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 123 FCICFRFVNYFFNHFLFLMDCIGDLFYRIMNIC 25
F CF F + + H L L C+ LF+ I+++C
Sbjct: 88 FYFCFTFYFHPYTHLL-LAFCVSKLFFWILSLC 119
>DQ150101-1|AAZ77787.1| 386|Caenorhabditis elegans synthetic
multivulva protein LIN-8 protein.
Length = 386
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 600 FLQKYYYSSNHINNSPTTFSSMTLPFPIQEFPCLVLTETSS 478
F Q+Y + P TFS+ P P++E P V+ SS
Sbjct: 276 FSQQYGGGGSPAVQKPVTFSAQPAPAPVREAPSPVVENVSS 316
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 123 FCICFRFVNYFFNHFLFLMDCIGDLFYRIMNIC 25
F CF F + + H L L C+ LF+ I+++C
Sbjct: 88 FYFCFTFYFHPYTHLL-LAFCVSKLFFWILSLC 119
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 123 FCICFRFVNYFFNHFLFLMDCIGDLFYRIMNIC 25
F CF F + + H L L C+ LF+ I+++C
Sbjct: 88 FYFCFTFYFHPYTHLL-LAFCVSKLFFWILSLC 119
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 123 FCICFRFVNYFFNHFLFLMDCIGDLFYRIMNIC 25
F CF F + + H L L C+ LF+ I+++C
Sbjct: 88 FYFCFTFYFHPYTHLL-LAFCVSKLFFWILSLC 119
>AF025452-10|AAB70947.2| 386|Caenorhabditis elegans Hypothetical
protein B0454.1 protein.
Length = 386
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 600 FLQKYYYSSNHINNSPTTFSSMTLPFPIQEFPCLVLTETSS 478
F Q+Y + P TFS+ P P++E P V+ SS
Sbjct: 276 FSQQYGGGGSPAVQKPVTFSAQPAPAPVREAPSPVVENVSS 316
>Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical
protein C50B6.2 protein.
Length = 582
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +3
Query: 273 DEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVV 449
DE++E Q E + AS++ A + KT+ S + + DE N+E + VV
Sbjct: 231 DERAEIKQKVEEALGVASEEPETVADEAVKTEQKEAEEDSVEKDVENSDEQNQEEEEVV 289
>U50135-3|AAA93454.1| 329|Caenorhabditis elegans Squashed vulva
protein 7 protein.
Length = 329
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 608 LSIFCKNIIIHRITLITHQQLSLQ*LCPSPYKSFLVSY 495
LS C ++ + + L TH +L C P K+ V+Y
Sbjct: 233 LSCICGFVLNYSLVLCTHHNSALTTTCVGPIKNLFVTY 270
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Frame = +3
Query: 219 TTPRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSED 398
T+P+ ++ + + D E E +T DKS + +T E+
Sbjct: 664 TSPKEESVSPKPDETHEEDADEEPVDEEMDTEVVVRDKSIDPVYQAMETSEAEVAETKEE 723
Query: 399 HIDSHVDE--TNEESDVVVNKLEEKGRFARMFQSIRDKET 512
+ DE N + DV +K E++ + + + + D E+
Sbjct: 724 SVPVEEDEEPENHDEDVEDHKKEKESQSSTINTADEDDES 763
>U40420-2|AAK84526.3| 245|Caenorhabditis elegans Hypothetical
protein F40F4.7 protein.
Length = 245
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/71 (18%), Positives = 32/71 (45%)
Frame = +3
Query: 261 SKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESD 440
SK + ++++ Q + +K+SP T+AV + D ++ + ++
Sbjct: 15 SKSAKKRAKKQQQQKRASESNDEKNSPTKSDAENTEAVSTPEKVSDSVEPEKQDQVDQLV 74
Query: 441 VVVNKLEEKGR 473
++NK + G+
Sbjct: 75 PLINKFDVNGK 85
>U80031-6|AAB37618.2| 491|Caenorhabditis elegans Hypothetical
protein B0554.7 protein.
Length = 491
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 302 FGLACFTFLVTVLTVSGLSCDISGTWSSSCNMGVLGS 192
F L C T+L + T + ++S W+ C +LG+
Sbjct: 121 FNLGCTTYLTSHSTRRSIESNVSLQWAIGCGSLILGA 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,998,395
Number of Sequences: 27780
Number of extensions: 280312
Number of successful extensions: 1106
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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