Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0345
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   1.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.3  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 474 FARMFQSIRDKETLVWGRAKSLKRKLLVS 560
           ++R+  SIR+ E ++  +AK +  K LVS
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMNVKSLVS 268


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 474 FARMFQSIRDKETLVWGRAKSLKRKLLVS 560
           ++R+  SIR+ E ++  +AK +  K LVS
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMNVKSLVS 268


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 350 PSLRTRFIRCACYCFVFGLACFTFLVTVLT 261
           PSL   F+   C  F+F L+  T   T+++
Sbjct: 107 PSLEDEFMGPKCAAFLFQLSFATTSTTIVS 136


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 314 YCFVFGLACFTFLVTVLTVSGLS 246
           +C V  LAC T  V V++V GLS
Sbjct: 153 FCVV--LACSTATVYVMSVVGLS 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,168
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)