Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0345
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13590.1 68418.m01572 expressed protein                             30   1.7  
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t...    30   1.7  
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    29   2.2  
At4g32610.1 68417.m04643 mitochondrial glycoprotein family prote...    29   2.9  
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   3.8  
At4g03100.1 68417.m00418 rac GTPase activating protein, putative...    28   5.0  
At3g28770.1 68416.m03591 expressed protein                             28   5.0  
At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2) ide...    28   6.7  
At5g15430.1 68418.m01806 calmodulin-binding protein-related has ...    28   6.7  
At1g27510.1 68414.m03353 expressed protein                             28   6.7  
At4g03330.1 68417.m00455 syntaxin, putative (SYP123) similar to ...    27   8.8  
At3g48260.1 68416.m05267 protein kinase family protein contains ...    27   8.8  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    27   8.8  
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic...    27   8.8  

>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -3

Query: 609 TQYFLQKYYYSSNHINNSPTTFSSMTLPFPIQEFPCLVLTETSSQ 475
           T Y   KY   SN I+N+P   S MT+   +Q  P     E S Q
Sbjct: 415 TPYQKDKYLPCSNGISNAPMPLSGMTIIPGVQSDPDCTSKENSGQ 459


>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
           fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
           GI:2905893
          Length = 687

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 264 KHSDEKSETGQSENETITCASDKSSPQAGKTAKTQ 368
           +HS E S++  +++ T TC S  SSP    T + +
Sbjct: 623 RHSRESSDSSSTQSTTTTCTSTASSPAPSVTEEEE 657


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +3

Query: 264 KHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDV 443
           K S    E G SE  T+      + P + +TA  + V P+  S+   D H  E+ E   V
Sbjct: 253 KRSKLPVEAGSSEANTVI-VEPLTVPPSPETAAVKIVNPVESSDVETDKHPIESKEIQIV 311

Query: 444 VVNKLEEK 467
             + +EE+
Sbjct: 312 DKSVIEER 319


>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SP|P40513
           Mitochondrial acidic protein MAM33, mitochondrial
           precursor {Saccharomyces cerevisiae}; contains Pfam
           profile PF02330: Mitochondrial glycoprotein
          Length = 557

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 225 PRSRYITTQSAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHI 404
           P+S + T++++HS   D  +E  +SE +T+    D    +  +      V P    E   
Sbjct: 87  PQSLWSTSEASHSDAKDVPAEEIESEEDTLDDGDDDDVEEDHEQGTETQVHPEAEPEVKK 146

Query: 405 DSHVDETNEESDVVVNKLEEK 467
              V    +E++  ++K E K
Sbjct: 147 APEVRAPPKEAERQLSKKERK 167


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 315 TCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEK 467
           T  S KS P+  KT   + +    RSE   + H  ET E   V    +EE+
Sbjct: 302 TNPSPKSEPEPVKTITVETIHSAERSEFETEKHTVETKEVQVVDKPVIEER 352


>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 3 [Lotus
           japonicus] GI:3695063; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 430

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/58 (20%), Positives = 28/58 (48%)
 Frame = +3

Query: 255 AHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETN 428
           +HS +S   S++  +++  ++C S  +  + G+  + + V           +H DET+
Sbjct: 318 SHSSNSQTDSDSDNAQDMEVSCESQATDSECGEEEEVEEVEQHQEHLSRHSTHEDETD 375


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/73 (20%), Positives = 34/73 (46%)
 Frame = +3

Query: 252  SAHSKHSDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNE 431
            S    HSD ++++ +S+NE +  A  +++ Q       +    +  ++   ++  +E N+
Sbjct: 1397 SQADSHSDSQADSDESKNEILMQADSQATTQRNNEEDRKKQTSVAENKKQKETK-EEKNK 1455

Query: 432  ESDVVVNKLEEKG 470
              D   N  E+ G
Sbjct: 1456 PKDDKKNTTEQSG 1468


>At5g15700.1 68418.m01836 DNA-directed RNA polymerase (RPOT2)
           identical to phage-type RNA polymerase rpoT2
           [Arabidopsis thaliana] GI:11340683
          Length = 1011

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 264 KHSDEKSETGQSENETITCASDKSSPQAGKTAKTQ---AVMPIVRSEDH 401
           K  D+  E+G  ENET     DK   +  +  K Q   AV  I++S D+
Sbjct: 306 KKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAVRKILQSHDY 354


>At5g15430.1 68418.m01806 calmodulin-binding protein-related has
           weak similarity to calmodulin-binding proteins
          Length = 478

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +3

Query: 249 QSAHSKHSDEKSETGQSENETITCASDKSSPQAGKT 356
           ++ H   S ++ E  + E+E ++ + DK++ + GK+
Sbjct: 306 ETEHEDESSQEEEDEEEEDENVSVSEDKNTTREGKS 341


>At1g27510.1 68414.m03353 expressed protein
          Length = 651

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 270 SDEKSETGQSENETITCASDKSSPQAGKTAKTQAVMPIVRSEDHIDSHVDE 422
           SD++ E  + EN++I   S   S   GK + T+ V+  V      DS +D+
Sbjct: 346 SDDEEEVEEEENDSIEAISSMDSADYGKHSNTKLVIGGVLHNIE-DSSIDD 395


>At4g03330.1 68417.m00455 syntaxin, putative (SYP123) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 305

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 366 QAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFARMFQSIRDKETLVWGRAKSLKR 545
           ++V   +++ D I   + + NEES  V +    K   ARM  S+    T V  R K +K 
Sbjct: 44  ESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSV----TEVLKRVKMIKT 99

Query: 546 KLL 554
           KL+
Sbjct: 100 KLV 102


>At3g48260.1 68416.m05267 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 516

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 333 SSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESDVVVNKLEEKGRFAR--MFQSIRDK 506
           SSP+AG         P  RS   + S     N+E  V+V KLE   R  R  + +  RD+
Sbjct: 426 SSPKAGAGDSRSPFAP--RSNSKLSSAQGPINQEVGVIVEKLESLLRKQREEIEEMQRDQ 483

Query: 507 ETLV 518
           E +V
Sbjct: 484 ERIV 487


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 251 LSCDISGTWSSSCNMGVLGSGEFAISTTLSGTVKIFVTS--SRSPFAFA 111
           L+C  S        +G L   +  ++ +L GT+ IF  S   +SPF F+
Sbjct: 273 LNCPGSSGGVDDMLVGCLWQNDHIVTVSLGGTISIFSASDLDKSPFQFS 321


>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
           to chromomethylase CMT3 [Arabidopsis thaliana]
           GI:14583092, GI:14647157
          Length = 839

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 330 KSSPQAGKTAKTQAVMPIVRSEDHIDSHVDETNEESD 440
           K +P+  KT K + V  +   E H+   +DE   ES+
Sbjct: 23  KRAPKRAKTVKEEPVTVVEEGEKHVARFLDEPIPESE 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,401
Number of Sequences: 28952
Number of extensions: 253184
Number of successful extensions: 889
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)