Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0344
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 151 7e-38
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 151 7e-38
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.63
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 151 bits (367), Expect = 7e-38
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S
Sbjct: 3 RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RIC NKYLVK GKD FH+
Sbjct: 63 EALEAARICANKYLVKIGGKDSFHL 87
Score = 139 bits (337), Expect = 3e-34
Identities = 65/91 (71%), Positives = 74/91 (81%)
Frame = +3
Query: 237 KGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 416
K S R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 82 KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTK 141
Query: 417 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 509
D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 455 CQVQVPRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
CQ + P + + K+ GF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 151 bits (367), Expect = 7e-38
Identities = 66/85 (77%), Positives = 74/85 (87%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++S
Sbjct: 3 RRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RIC NKYLVK GKD FH+
Sbjct: 63 EALEAARICANKYLVKIGGKDSFHL 87
Score = 139 bits (336), Expect = 4e-34
Identities = 65/91 (71%), Positives = 74/91 (81%)
Frame = +3
Query: 237 KGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 416
K S R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 82 KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTK 141
Query: 417 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 509
D +A IEALRR ++KFPG+Q+I VSKKWG
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRIIVSKKWG 172
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 455 CQVQVPRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
CQ + P + + K+ GF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.63
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 19 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 195
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 196 G 198
G
Sbjct: 94 G 94
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Frame = +3
Query: 264 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 431
L P R+ C G GK +G AR+ IG+ + + K
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158
Query: 432 QVIEALRRAKFKFPGRQKIYVSK 500
AL++A F PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 76 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 195
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 110 RERPLTTFHCACTWCPTNMNS 172
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 368 STLRLAKRTTHPSLEPISSS 309
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 195 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 79
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 436 SSRLCAVPSSSSPDVKRSTYQRSGVH 513
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 62 VGVYLIPRSVSSIWV 106
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 97 DLGKKRATVDDFPLCVHLVSDEYEQL 174
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,593
Number of Sequences: 5004
Number of extensions: 61935
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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