Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0344
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 140 1e-33
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 138 4e-33
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 138 5e-33
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 1.1
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.1
02_01_0259 - 1719673-1720857 31 1.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.1
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 6.1
07_03_1509 - 27246721-27247350 28 6.1
02_01_0254 - 1669461-1669590,1669833-1672318 28 8.0
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 140 bits (338), Expect = 1e-33
Identities = 60/81 (74%), Positives = 68/81 (83%)
Frame = +1
Query: 13 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALE 192
RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALE
Sbjct: 314 RCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALE 373
Query: 193 AGRICCNKYLVKXCGKDQFHI 255
A RI CNKY+ K GKD FH+
Sbjct: 374 AARIACNKYMAKHAGKDAFHL 394
Score = 134 bits (324), Expect = 6e-32
Identities = 64/95 (67%), Positives = 72/95 (75%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 509
VR D A EALRRAKFKFPGRQ++ S KWG
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWG 479
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 506 GFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 604
GFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 479 GFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 138 bits (334), Expect = 4e-33
Identities = 66/95 (69%), Positives = 73/95 (76%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 509
VR EALRRAKFKFPGRQKI S+KWG
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWG 168
Score = 127 bits (307), Expect = 7e-30
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = +1
Query: 16 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 195
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 196 GRICCNKYLVKXCGKDQFHI 255
RI CNKY+ K GKD FH+
Sbjct: 64 ARIACNKYMTKSAGKDAFHL 83
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 470 PRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDG 574
P K + ++ GFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 138 bits (333), Expect = 5e-33
Identities = 60/85 (70%), Positives = 68/85 (80%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SS
Sbjct: 3 RRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RI CNKY+ K GKD FH+
Sbjct: 63 EALEAARIACNKYMTKNAGKDAFHL 87
Score = 138 bits (333), Expect = 5e-33
Identities = 66/95 (69%), Positives = 74/95 (77%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 509
VR + EALRRAKFKFPGRQKI S+KWG
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWG 172
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 470 PRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
P K + ++ GFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 118 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKXCG 237
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 397 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 305
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>02_01_0259 - 1719673-1720857
Length = 394
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 151 PSARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTGSISPR 5
PS+R ++ R+L Y +R G + +V R + +T Y STG+ PR
Sbjct: 134 PSSRPKDNELRTLGFYFHRPSGEY-RVLCHRPLLDNTTYILSTGAAEPR 181
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 351 GKPQGTVARVRIGQPIMSVRSSD 419
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -2
Query: 655 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 530
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>07_03_1509 - 27246721-27247350
Length = 209
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 385 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSG 507
L P PC RH RL +P +SSSP+++R+T R+G
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAG 177
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 664 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 533
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,786,420
Number of Sequences: 37544
Number of extensions: 464934
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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