Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0344
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 84 1e-16
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 3.6
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 3.6
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4) 29 4.7
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 28 6.2
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 6.2
SB_36413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 8.2
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 83.8 bits (198), Expect = 1e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +3
Query: 336 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 485
MRGAFGKPQGTVARV IGQ I+S+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 190 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 74
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 218 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 87
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 218 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 87
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +3
Query: 342 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKW 506
G G+P G+V + +++++ +W + E++ A + FP S+ W
Sbjct: 1109 GVDGRPSGSVEILGSRDSFVAIQNGRQWMLDIEESISIAFYVFPNNSLGNTSRNW 1163
>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
Length = 1023
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 76 DPKIRIFDLGKKRATVDDFPLCV--HLVSDEYEQLSSEALEAGRICCNKYLVKXCGKDQF 249
+P +R+ + + VD+ + H ++ EY S ++ + N ++ GKD+F
Sbjct: 259 NPSLRLSNDARHEIAVDNISMTYSWHNINPEYGNDSVKSTHLTDMKSNGHVGVVDGKDKF 318
Query: 250 HIA*DFTLSTLSASIKC--YHALELIGSRLGCVV 345
+I F L+T + + L++ G+R G V+
Sbjct: 319 YIDIVFVLTTYKVVVIVGDNYELDIRGTRFGEVI 352
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 20 TGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 133
T N++ +G V LIP+ +I VR +P T+F
Sbjct: 320 TVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 22 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 201
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 202 IC 207
+C
Sbjct: 500 MC 501
>SB_36413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 342 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGSQSM 521
G G+ + V G P S + RW+ + AL + K + +V K+WG+ S
Sbjct: 49 GEAGEVENGEYSVIYGSP-ESWLKNQRWRELLSSALFKEKLCCIAVDEAHVIKQWGTSST 107
Query: 522 NVM-SLRSCVKRAASLMTAA 578
N M + R+ L T A
Sbjct: 108 NKMVAFRTIYSELHELRTLA 127
>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 476 SGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 339
+G + T D+C+P + HGH +ANT CY + A +T
Sbjct: 74 AGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 344 CVWQASGYCSTCSHWTAHHV 403
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,343,772
Number of Sequences: 59808
Number of extensions: 514357
Number of successful extensions: 1558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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