Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0344
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 139 2e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 138 2e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 138 3e-33
At5g47870.1 68418.m05914 expressed protein 29 3.8
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.1
At2g16720.1 68415.m01918 myb family transcription factor contain... 28 5.1
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 27 8.9
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 27 8.9
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 139 bits (336), Expect = 2e-33
Identities = 67/100 (67%), Positives = 74/100 (74%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGSQSMN 524
VR D EALRRAKFKFPGRQKI VS+KWG N
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 138 bits (335), Expect = 2e-33
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SS
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RI CNKY+VK GKD FH+
Sbjct: 63 EALEAARIACNKYMVKSAGKDAFHL 87
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 470 PRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
P K + ++ GFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 138 bits (335), Expect = 2e-33
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SS
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RI CNKY+VK GKD FH+
Sbjct: 63 EALEAARIACNKYMVKSAGKDAFHL 87
Score = 138 bits (333), Expect = 4e-33
Identities = 67/100 (67%), Positives = 74/100 (74%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGSQSMN 524
VR D EALRRAKFKFPGRQKI VS+KWG N
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +2
Query: 470 PRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
P K + ++ GFTK+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 138 bits (334), Expect = 3e-33
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = +1
Query: 1 RHEARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 180
R ARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SS
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSS 62
Query: 181 EALEAGRICCNKYLVKXCGKDQFHI 255
EALEA RI CNKY+VK GKD FH+
Sbjct: 63 EALEAARIACNKYMVKSAGKDAFHL 87
Score = 138 bits (333), Expect = 4e-33
Identities = 67/100 (67%), Positives = 74/100 (74%)
Frame = +3
Query: 225 KEXRKGSVPYRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 404
K K + R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 405 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGSQSMN 524
VR D EALRRAKFKFPGRQKI VS+KWG N
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFN 177
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +2
Query: 470 PRTSKDLRIKEVGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 610
P K + ++ GFTK+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 255 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 434
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 435 VIEALRRAKFKFP 473
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 154 SDEYEQLSSEALEAGRICCNKYLV 225
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At2g16720.1 68415.m01918 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 269
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 380 SHWTAHHVRAL**Q-VEGTGHRGSAPCQVQVPRTSKDLRIKEVGF-TKYERDEFEKLREE 553
++W H R L + ++ HRG ++ + +KD +K+V F TK+E + +++
Sbjct: 106 NYWNTHIKRKLLSKGIDPATHRGINEAKISDLKKTKDQIVKDVSFVTKFEETDKSGDQKQ 165
Query: 554 GRLANDGCI 580
+ +G +
Sbjct: 166 NKYIRNGLV 174
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 382 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 510
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 382 ALDSPSC----PCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGV 510
+++SPS P L+ G SS +PSSS+ RS ++RSG+
Sbjct: 482 SIESPSASHGGPLPLLPAGPSVSSNEVTMPSSSNSRSHRSRHRRSGL 528
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,126
Number of Sequences: 28952
Number of extensions: 347481
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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