Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0343
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   5.9  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    25   7.8  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 275 FIYTRNILRVSNLSLVHSFFRLF 207
           F YTRNI+ VS  SLV   FR F
Sbjct: 22  FCYTRNIMSVSASSLVPKDFRAF 44


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 139 LVHRKLLNIFNYDDFLWNLCRSINKRKK 222
           +  R ++ I NYD F WN+ + ++  +K
Sbjct: 23  VAERPIVMIDNYDSFTWNVVQYLSNLEK 50


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = -3

Query: 241 IYLW---CILFFVCLLNDIN 191
           IYLW   C+ FF+ LL+D+N
Sbjct: 869 IYLWQNKCLDFFLSLLSDLN 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,065
Number of Sequences: 5004
Number of extensions: 49846
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)