Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0343
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)                      31   1.2  
SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2)                    28   6.2  
SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    28   8.1  

>SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)
          Length = 544

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +2

Query: 17  FIDILTVVSDSYQGTPKQNFCVTFNFKDVINIFYLHYFIMS*FIENF*ISLIMMIFSGI 193
           F+ +L  + D++ G      C+T   +  + I+YLHY + S    +  +S +   F+G+
Sbjct: 406 FLHLLCALRDAFNGVSSSTMCITGCIQWRVIIYYLHYGMHSMGCHHL-LSALRNAFNGV 463


>SB_18662| Best HMM Match : Toxin_27 (HMM E-Value=2)
          Length = 253

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 172 YDDFLWNLCRSINKRKKECTKDKLLTRKIFR 264
           Y   +W+ CRS NKRK E  + + L R +F+
Sbjct: 148 YCHLVWHFCRSSNKRKPERVQKRGL-RAVFK 177


>SB_42700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 160 NIFNYDDFLWNLCRSINKRKKECTKDKLLTRK 255
           ++ NY D +  +  SI KR+ EC K+  L  K
Sbjct: 163 DLVNYPDRIDEILDSIKKRRDECVKELALLEK 194


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  ILTVVSDSYQGTPKQNFCVTFNFKDVINIFYLHY 127
           +L  + D++ G      C+T   +  + IFY+HY
Sbjct: 38  LLCALWDAFNGVSSSTMCITECIQWRVTIFYVHY 71


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  ILTVVSDSYQGTPKQNFCVTFNFKDVINIFYLHY 127
           +L  + D++ G      C+T   +  + IFY+HY
Sbjct: 38  LLCALWDAFNGVSSSTMCITECIQWRVTIFYVHY 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,610,361
Number of Sequences: 59808
Number of extensions: 315990
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)