Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0343
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    28   5.4  
AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   7.2  
AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin...    28   7.2  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   7.2  

>Z70312-6|CAA94387.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = +1

Query: 304 LHRGIS-KHINNSHYR*LEIRFV-LKIQDNEEEKKVC 408
           LH+ IS + IN +++R  ++ +V LKIQD +E+ K+C
Sbjct: 411 LHKTISIQLINAANWRPNDVFYVHLKIQDVDEDSKIC 447


>Z70309-14|CAA94363.1|  807|Caenorhabditis elegans Hypothetical
           protein ZC168.1 protein.
          Length = 807

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/37 (43%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
 Frame = +1

Query: 304 LHRGIS-KHINNSHYR*LEIRFV-LKIQDNEEEKKVC 408
           LH+ IS + IN +++R  ++ +V LKIQD +E+ K+C
Sbjct: 411 LHKTISIQLINAANWRPNDVFYVHLKIQDVDEDSKIC 447


>Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.9 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 512 NDCFKKVKIRH--IIYIIVSETH*RLH*TLFIWCQFAQTFFSSSLSWILRTNLISNYL 345
           N C++   + H  ++Y ++  +   L   LF+W  FA+T  S  +S   +  L+ + +
Sbjct: 165 NQCYQDYWVNHEQVLYYLIGSSSVILFFRLFVWSYFAKTQTSQLISRATQIALLDSII 222


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 662 NH-KYFKFVFQFLILKFYVFDIKTVQF 585
           NH +YF ++  +L L+F+++ I T+QF
Sbjct: 14  NHTEYFPYLKNYLYLEFFLYIIDTIQF 40


>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 235 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 62
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


>AF040644-2|AAN63399.1|  963|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform b protein.
          Length = 963

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 235 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 62
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 235 LWCILFFVCLLNDINSRENHHN*RYLKVFYELRHNKIM*IKYINHIFKIESDTKVLLR 62
           +W I    C   D +S+      R+L   Y LR N    +  + H+F I + T + +R
Sbjct: 698 IWSIDLARCSTQDASSQNLPEIQRFLIKNYSLRENATCLLNMLAHVFSIINSTLLRVR 755


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,267
Number of Sequences: 27780
Number of extensions: 270205
Number of successful extensions: 581
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)