Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0342
         (671 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7NAI2 Cluster: Putative uncharacterized protein; n=1; ...    34   3.6  
UniRef50_UPI00006A2C57 Cluster: UPI00006A2C57 related cluster; n...    33   8.3  

>UniRef50_Q7NAI2 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma gallisepticum|Rep: Putative uncharacterized
           protein - Mycoplasma gallisepticum
          Length = 1274

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
 Frame = -3

Query: 630 LVRSRSFNIPRALRVYYKHIPKIV*SHNETRLNSYMNDSKIYN---SLKYSMTSCKSIPK 460
           L+R R + + R + + +K+       + E  LN+Y    K++N   +LK    + K  PK
Sbjct: 64  LIRRRKYKLKRFVNLIWKYNSYFGFKNKEDILNNYQEQQKLHNTVLNLKLEALNAKIDPK 123

Query: 459 FK*ISYFIKSSITIGFYFNSRYSDINVYSSNE 364
              +S+ +   +    +F     D NVY + E
Sbjct: 124 A--LSWILHDYLKNRGHFYEDNRDFNVYPTEE 153


>UniRef50_UPI00006A2C57 Cluster: UPI00006A2C57 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A2C57 UniRef100 entry -
           Xenopus tropicalis
          Length = 669

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 288 HRASHLRYSFINRGITVVPTCKCW*RRCHCHACPQIVNID 169
           H ++ LR  +   G+  VP  K W   CH    P+++N D
Sbjct: 467 HLSNTLRQWYFKEGVAEVPALKVWQDTCHYLYLPRLINSD 506


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,508,295
Number of Sequences: 1657284
Number of extensions: 11400008
Number of successful extensions: 26070
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26067
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)