Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0342
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       29   0.81 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    28   1.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.7  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   5.7  

>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 396 YSDINVYSSNEKVYKIVC-DTKIRSMCKTKLYY 301
           YS I+V    EKVY  +C +  +R + + KLYY
Sbjct: 349 YSWIDVAERTEKVYDSICSENNLRLIDRLKLYY 381


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = -3

Query: 543 TRLNSYMNDSKIYNSLKYSMTSCKSIPKFK*ISYFIKSSITIGFYFNSRYSDINVYSSNE 364
           T+ +S M    + N++ +   + K+IP F     FI  + +I F+ +S    I+   ++E
Sbjct: 235 TKKDSSMTLCSLLNAISFEPINLKAIPLF-----FIICADSINFHLSSVEKSISQQKASE 289

Query: 363 KVYKI 349
            +YK+
Sbjct: 290 LMYKL 294


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -3

Query: 198 HACPQIVNIDAPLKSIHLMRTLHFMYEYSLYLNRSIELYIQGHKIDFDSAKYDEHNMYVR 19
           HA   ++  D P      +  L  +      L   +++Y+ G   D  S+ YD  N Y +
Sbjct: 198 HAVLLMIRSDDPHDKSQTIDYLIIVIGILYTLEMLLKIYLFGFLYDGSSSFYDFINSYTK 257

Query: 18  KVP 10
           K P
Sbjct: 258 KTP 260


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 384 NVYSS-NEKVYKIVCDTKIRSMCKTKLYY**AKHRASHLRYSFI 256
           N +SS  +K YK   D ++ S+ K +L    A  + SH+ +S I
Sbjct: 442 NYFSSLGDKAYKDATDKRVASITKFQLLLVTAFKKFSHITHSLI 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,169
Number of Sequences: 5004
Number of extensions: 53682
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)