Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0342
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.1  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   8.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   8.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 264 SFINRGITVVPTCKCW*RRCHCHACPQIVNIDAPLKSIHLMRTLHFM 124
           + +  G+T++P C C    C     P +  I  P   + L + L ++
Sbjct: 303 ALLTPGVTMIPACTCKAVAC---LDPYVYAISHPKYRLELQKRLPWL 346


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 145 QVYRF*WRVNVYNLRACVAMTSS 213
           Q Y + W + +  LRA V+ TSS
Sbjct: 96  QQYPWQWGLGICKLRAYVSETSS 118


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 567 KIV*SHNETRLNSYMNDSKIYNSLKY 490
           K + ++N    N+Y N  K+Y ++ Y
Sbjct: 88  KTIHNNNNYNNNNYNNYKKLYYNINY 113


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 385 DITVSGIEIETDSYARFNKVTDSFEFR 465
           +I + G EIE      FN   D  E R
Sbjct: 53  EIVIGGFEIEKSEDDSFNNQADKSEKR 79


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 609 NIPRALRVYYKHIPK 565
           ++  AL++YY H+P+
Sbjct: 263 SVLHALQLYYPHVPE 277


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 609 NIPRALRVYYKHIPK 565
           ++  AL++YY H+P+
Sbjct: 278 SVLHALQLYYPHVPE 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,892
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)