Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0342
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g26860.1 68414.m03276 hypothetical protein                          31   0.53 
At5g51900.1 68418.m06438 cytochrome P450 family similar to cytoc...    28   4.9  
At1g79950.1 68414.m09344 helicase-related similar to BRCA1-bindi...    28   4.9  

>At1g26860.1 68414.m03276 hypothetical protein
          Length = 240

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 88  FN*SVQIQRVFVHKMKCPHQVYRF*WRVNVYNLRACVAMTSSL 216
           F+  +++ + F  K++CP ++Y F W++    L  CV +T +L
Sbjct: 7   FDPDIKVLKAFSWKVQCPPKLYHFLWQI----LAGCVPITDNL 45


>At5g51900.1 68418.m06438 cytochrome P450 family similar to
           cytochrome P450 86A1 (SP:P48422) [Arabidopsis thaliana]
          Length = 242

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 337 SIANNFIHLFIRTIHVDITVSGIEIETDSYARFNKVTDSF 456
           S  NN  H FIR  H ++  S I+++T  Y   + + D F
Sbjct: 50  SQVNNNDH-FIRDSHANLLTSHIKLDTTQYQLLDPINDKF 88


>At1g79950.1 68414.m09344 helicase-related similar to BRCA1-binding
           helicase-like protein BACH1 (GI:13661819) Homo
           sapiens].; contains similarity to helicase-like protein
           NHL GI:6969265 from (Homo sapiens)
          Length = 1040

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -1

Query: 455 NESVTLLNLA*LSVSISIPDTVISTCIVLMKRCIKLFAILKYVQCAKLN-CTINKQNIAR 279
           +E+  L +L   S S  +P  ++S CI   + C++L A  +      LN  +IN +N A 
Sbjct: 289 DEAHNLESLCADSASFDLPSVLLSACISEAQECVQLAAARR----DSLNDVSINPENFAI 344

Query: 278 VTFVILSLIE 249
           +  ++L L E
Sbjct: 345 LKGLLLKLQE 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,697
Number of Sequences: 28952
Number of extensions: 253438
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)