Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0341
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0939 - 29530242-29531087,29531406-29531597,29531690-295317...    29   3.5  
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794...    29   4.6  

>04_04_0939 -
           29530242-29531087,29531406-29531597,29531690-29531770,
           29532300-29532428,29532579-29532650,29532761-29532829,
           29533809-29533891,29534101-29534203,29534289-29534402,
           29536230-29536274
          Length = 577

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 47  SESKIVEPVFAQEQYQTDKHEIINTTSNAKTLVIEPIFNHVTEKS 181
           + S +++PV  + QY+ D+    NT+  +  + ++ I NH+  +S
Sbjct: 355 ASSSVLKPVNTRAQYEADRCSSDNTSCRSSVMSVD-IGNHINSRS 398


>12_02_0580 +
           20776820-20777247,20777341-20778109,20779280-20779447,
           20779877-20780236
          Length = 574

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 460 TVMDDNVNIPINSYGTFPDVHLRTNYKRCINAIDYADRQIGSITNQPTTCRV 615
           T+ D N  +PI S G F  +   T  +  INA D  D ++G + + P   R+
Sbjct: 212 TLCDANTVVPIASAGAFRALTDFTLCRAKINAYDNDDLRLGHLLSSPCCPRL 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,170
Number of Sequences: 37544
Number of extensions: 315448
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)