Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0341
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)                  28   6.2  
SB_21250| Best HMM Match : Keratin_B2 (HMM E-Value=5.5)                28   6.2  
SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)           28   8.3  

>SB_45843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 537 IICSQMDVRECTIT---INWYVYIIIHHCILIKHNVSLVRVLCKYIT 406
           I+C Q + +E  +T   + WYVYII+  C ++     + R + ++ T
Sbjct: 174 ILCVQQNRQEGVLTWYVLTWYVYIIVAMCTIVTSYYKIFRTIRRHQT 220


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 576 LTIGVIYCVDAPFIICSQMDVREC-TITINWYVYIIIHHCILIKHNVSLVRVLCKYITI 403
           L + V YC+      C  + V  C ++T+++ + + +H C+ +  +  L   +C  ++I
Sbjct: 334 LLLSVRYCLSVTVHCCLSVTVHYCLSVTVHYCLSVTVHCCLSVTVHYCLSVTVCLLLSI 392



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 576 LTIGVIYCVDAPFIICSQMDVREC-TITINWYVYIIIHHCILI 451
           L++ V YC+ A    C    V  C ++T+++ + + +H C+ +
Sbjct: 566 LSVTVHYCLSATVHYCLSATVHYCLSVTVHYCLSVTVHCCMSV 608


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -1

Query: 449 NTMSVSLGYYVSISLYCFTGGLRV*PNMLLVWEGFALFILLLGFEIASTFT 297
           + +S+ L  +  IS+  ++G L +  N+ L W  +A  ILLLG     T T
Sbjct: 411 SVLSLLLYIFTKISVNLYSGALFI--NLALGWNLYAAIILLLGLACLCTIT 459


>SB_52610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 384 TCVTQYASSVGRICIIYTFIRL*DCINFYDLFSDVLVVFNDKIRDLCI 241
           TC+T+Y   +   CII   IRL  CI  Y +  +  ++   K ++ CI
Sbjct: 47  TCITRYQIRL-ETCIIRYQIRLETCIIRYQIRLETCIIRYQKRQETCI 93


>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -3

Query: 477 IIIHHCILIKHNVSLVRVLCKYITI---LFYRWFT---CVTQYASSVGRICIIYTFIRL* 316
           I +H C+  +      R+  + IT+   + +R  T   CVT + S     C+ +  I L 
Sbjct: 60  ITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVT-FRSITLHECVTFWSITLH 118

Query: 315 DCINFYDLFSDVLVVFNDKIRDLCISF 235
           +C+ F+ +     V F       C++F
Sbjct: 119 ECVTFWSITLHECVTFRSITLHECVTF 145


>SB_21250| Best HMM Match : Keratin_B2 (HMM E-Value=5.5)
          Length = 210

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 348 ICIIYTFIRL*DCINFYDLFSDVLVVFNDKIRDLCI--SFCLSNVC*DASDAKNISF 184
           IC++   +R   C+   D+ SD+ V+  D    +C+  S   S +C  +SD +++ +
Sbjct: 75  ICVMSGDVRSGICVMSSDVRSDICVMSGDVRSGICVMSSDVRSGICVMSSDVRSVMY 131


>SB_46775| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-27)
          Length = 317

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 651 ILLFSIICLSIVDSTS-SGLICYGSDLTIGVIYCVDAPFIICSQMDVRECTITINWYV 481
           I+L    CL   +     G +C G D+T+ ++Y + A F  C++ +         W++
Sbjct: 164 IILIETRCLKRTEVKGLEGKVCLG-DITVAILYLLIASFFSCTRENWTFLQSVYAWFI 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,843,512
Number of Sequences: 59808
Number of extensions: 422225
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)