Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0341
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    35   0.24 
X17097-1|CAA34956.1|  419|Homo sapiens protein ( Human PSG9 mRNA...    30   9.0  
U18468-1|AAA75294.1|  419|Homo sapiens pregnancy-specific beta 1...    30   9.0  
M94891-1|AAA60195.1|  419|Homo sapiens pregnancy-specific beta-1...    30   9.0  
M33665-1|AAA60208.1|  212|Homo sapiens pregnancy-specific beta-1...    30   9.0  
BT007413-1|AAP36081.1|  419|Homo sapiens pregnancy specific beta...    30   9.0  
BC008405-1|AAH08405.1|  419|Homo sapiens PSG4 protein protein.         30   9.0  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    30   9.0  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 35.1 bits (77), Expect = 0.24
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = -3

Query: 594 ICYGSDLTIGVIYCVDAPFIICSQMDVRECTIT-INWYVYIIIHHCILIKHNVSLVRVL- 421
           +C    + + +  C+     +C+ + +  C  T I  Y+Y  IH C+ I   VS+   + 
Sbjct: 67  VCVHIHICVHIYLCMYTHTYMCAHIHM--CVYTYIYVYIYTHIHICVHINMYVSIYVYIY 124

Query: 420 -CKYITILFYRWFTCVTQYASSVGRICI 340
            C  I I  Y  + C   Y  +   ICI
Sbjct: 125 TCIQIYIYMYTLYVCTYTYMCTYIHICI 152


>X17097-1|CAA34956.1|  419|Homo sapiens protein ( Human PSG9 mRNA
           for pregnancy specific glycoprotein 9. ).
          Length = 419

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 239 LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 272


>U18468-1|AAA75294.1|  419|Homo sapiens pregnancy-specific beta
           1-glycoprotein 4 precursor protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 239 LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 272


>M94891-1|AAA60195.1|  419|Homo sapiens pregnancy-specific beta-1
           glycoprotein protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 239 LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 272


>M33665-1|AAA60208.1|  212|Homo sapiens pregnancy-specific
           beta-1-glycoprotein 4 protein.
          Length = 212

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 32  LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 65


>BT007413-1|AAP36081.1|  419|Homo sapiens pregnancy specific
           beta-1-glycoprotein 4 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 239 LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 272


>BC008405-1|AAH08405.1|  419|Homo sapiens PSG4 protein protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 313 ISKPNKSINNANPSHTRSILGHTRKPPVKQYSDI 414
           +SKP  +INN NP   + +L  T +P  + Y+ I
Sbjct: 239 LSKPYITINNLNPRENKDVLTFTCEPKSENYTYI 272


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
 Frame = -3

Query: 651 ILLFSIICLSIVDSTSSGLICYGSDLTIGVIYCVDAPFIICSQMDVRECT---ITINWYV 481
           + L+  +C+ I  S     +C    + + +  CV     +C  + V  C    ++I+  V
Sbjct: 15  VCLYLYVCVCICVSVC---VCICVSVCVCICVCVSVFVCVCICVCVCVCVSMCVSISVCV 71

Query: 480 YIIIHHCILIKHNVSLVRVLCKYITILFY 394
           Y+ +  C+ +   VS+   LC ++ +  Y
Sbjct: 72  YLCLCVCVSVCVYVSVCMYLCVFLCVCVY 100


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,819,990
Number of Sequences: 237096
Number of extensions: 1811746
Number of successful extensions: 2532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2531
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)