Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0341
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine re...    33   0.19 
Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical...    30   1.4  
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    28   5.5  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    28   5.5  
U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine
           receptor, class x protein39 protein.
          Length = 290

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = -3

Query: 582 SDLTIGVIYCVDAPFIICSQMDVRECTITINWYVYIIIHHCILIKH-NVSLVRVLCKYIT 406
           +D T   +Y   A  ++  + D+     ++  YV +I +      H  +SL R+L  Y  
Sbjct: 49  ADGTFSALYLFYATPMVFFESDILSNYSSVCGYVLMICYSASTTFHFMISLNRILAVYKP 108

Query: 405 ILFYRWFTCVTQYASSVG----RICIIYTFIRL*DCINFYD 295
           +L+   F+ +  +   +G     + II  F ++  C NFYD
Sbjct: 109 MLYRMMFSVLFTFCIVMGIYSYALTIITLFFQILGCQNFYD 149


>Z77669-3|CAB01241.2|  259|Caenorhabditis elegans Hypothetical
           protein T07F10.4a protein.
          Length = 259

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 147 ITRVFALDVVFIISCLSVWYCSCANTG 67
           +TR+F L  +F IS LS+WY  C+  G
Sbjct: 1   MTRLFILPAIFGISSLSLWYMICSAPG 27


>Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical
           protein F10B5.9 protein.
          Length = 176

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/88 (20%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = -3

Query: 651 ILLFSIICLSI-VDSTSSGLICYGSDLTIGVIYCVDAPFIICSQMDVRECTITINWYVYI 475
           +L   +  LSI +   + G++CYG+++T+ +IY +    +I S + V   + T  +   +
Sbjct: 8   VLTTQVFMLSIDILFNALGVLCYGNNMTLLLIYILQDTLLIMSSL-VLFVSFTATFVFQL 66

Query: 474 IIHHCILIKH-NVSLVRVLCKYITILFY 394
            + H ++ +     ++ +L  +++I ++
Sbjct: 67  GLIHIVIFQFLPTVIISILYTFVSIGYH 94


>AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical
           protein Y38E10A.18 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 640 FDYLFKYCRLDK*WVDLLWI 581
           F+ L+KYC     W+DL WI
Sbjct: 205 FEVLYKYCSFSSLWMDLSWI 224


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 289 EKIVKVDAISKPNKSINNANPSHTRSILGHTRKPPVKQYSDILT*YPNE 435
           +K V VDA      S  +++ S +  ++    + P+ +YS IL  YP E
Sbjct: 107 QKCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQE 155


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 289 EKIVKVDAISKPNKSINNANPSHTRSILGHTRKPPVKQYSDILT*YPNE 435
           +K V VDA      S  +++ S +  ++    + P+ +YS IL  YP E
Sbjct: 88  QKCVNVDASRSIGTSSASSSSSESSPLVSPIIEKPIGKYSKILKRYPQE 136


>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -3

Query: 579 DLTIGVIYCVDAPFIICSQMDVRECTIT--INWYVYIIIHHCILIKHNVSLVRVLCKYI 409
           DL++  I+  D    + S+ ++ +   T  ++W  YI+ HH +L +HN++L  ++ +YI
Sbjct: 126 DLSLLQIHIRDYDGYLSSKYELLQLRQTQRVSWLGYIVAHH-LLKEHNLAL-GIMAEYI 182


>U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical
           protein F21D12.3 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
 Frame = -3

Query: 594 ICYGSDLTIGVIYCVDAPF--IICSQMDVRECTITINWYVYII---IHHCILIKHNVSLV 430
           + YG  +T  VIY + +P   ++ + M    C +T+   +  +   + H   I H   + 
Sbjct: 290 VVYGDSMTDSVIYSIQSPSLQLLANLMISFHCIMTLVIVINPLNQEVEHYAKISHAFGIG 349

Query: 429 RVLCKYITILFYRWFTCVT 373
           RV+ + I +LF   F  +T
Sbjct: 350 RVITRTI-VLFLVLFVALT 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,799
Number of Sequences: 27780
Number of extensions: 325403
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)