Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.011
UniRef50_Q5CUG1 Cluster: Putative uncharacterized protein; n=3; ...    37   0.41 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    36   0.94 
UniRef50_Q8WYV6 Cluster: Putative uncharacterized protein pp1457...    35   1.6  
UniRef50_Q8IDG7 Cluster: Putative uncharacterized protein PF13_0...    33   6.6  
UniRef50_Q8LXB4 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   8.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 18/21 (85%), Positives = 18/21 (85%)
 Frame = +2

Query: 104 LLLEWVYELIAHLVLSGYWSP 166
           LLL WV EL AHLVLSGYWSP
Sbjct: 155 LLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q5CUG1 Cluster: Putative uncharacterized protein; n=3;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 2691

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 554 EDKVFSETVVRDHKNYKLLEKWEINLREKKMRNGIY 661
           E+ VF   + +DH+N KL+  W+IN  E+ + NGI+
Sbjct: 39  ENLVFFFIITKDHENAKLIYSWKINSEEELILNGIW 74


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.9 bits (79), Expect = 0.94
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = +1

Query: 268 AGWWYPPAWTHKRSYHQ 318
           A WWY PA THKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q8WYV6 Cluster: Putative uncharacterized protein pp14571;
           n=1; Homo sapiens|Rep: Putative uncharacterized protein
           pp14571 - Homo sapiens (Human)
          Length = 121

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +2

Query: 254 YGRNRRGGGTHPRGLTRDPTTSND 325
           +GRNRRGG    R LT DPTTS +
Sbjct: 6   WGRNRRGGSKGTRPLTSDPTTSRE 29


>UniRef50_Q8IDG7 Cluster: Putative uncharacterized protein
           PF13_0277; n=4; Plasmodium|Rep: Putative uncharacterized
           protein PF13_0277 - Plasmodium falciparum (isolate 3D7)
          Length = 2068

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 575 FLKKLYLPDIVYYFHAALEFIHKLVFETSKILYNIKDNK 459
           FL+ +++    YY     E+++ L+FE SK  Y+IK  K
Sbjct: 58  FLQHIFVHIFYYYIEKKKEYLNNLIFEQSKEHYDIKGQK 96


>UniRef50_Q8LXB4 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=3; Chrysomeloidea|Rep: NADH-ubiquinone oxidoreductase
           chain 2 - Crioceris asparagi (Common asparagus beetle)
           (Leaf beetle)
          Length = 338

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 318 VMTVIGLKHLILKE*SAYEEIYSQHWMDMGYRRVGTI-IALLLMFNLTFVILNIIQYFRS 494
           V +++GL  + L++  AY  I    WM      V TI +   L++++T   +NI+  F++
Sbjct: 164 VGSILGLNQISLRKILAYSSINHMAWMISTMVSVKTIWLPYFLVYSVT--TINIVLIFKN 221

Query: 495 FEY*FMNK 518
           F   F+N+
Sbjct: 222 FNIYFLNQ 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,476,774
Number of Sequences: 1657284
Number of extensions: 12877005
Number of successful extensions: 31353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31346
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)