Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   1.0  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   1.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    23   1.8  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    23   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.5  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.5  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   7.2  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 429 IALLLMFNLTFVILNIIQYF 488
           I LLLMF ++FV++ I  +F
Sbjct: 525 IVLLLMFGVSFVVIVITIFF 544


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 429 IALLLMFNLTFVILNIIQYF 488
           I LLLMF ++FV++ I  +F
Sbjct: 250 IVLLLMFGVSFVVIVITIFF 269


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 441 LMFNLTFVILNIIQYFRSFEY*FMNKFEC 527
           L   L + +L IIQ+  S  + FM++F C
Sbjct: 53  LPLTLLYKLLGIIQFPISAHFSFMSRFLC 81


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 441 LMFNLTFVILNIIQYFRSFEY*FMNKFEC 527
           L   L + +L IIQ+  S  + FM++F C
Sbjct: 9   LPLTLLYKLLGIIQFPISAHFSFMSRFLC 37


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 263 NRRGGGTHPRGLTRDPTTSNDCYW 334
           N   G TH  G+  D  TSN  +W
Sbjct: 168 NTMSGATHHGGIKSDSVTSN-AWW 190


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 572 LKKLYLPDIVYYFHAALEFIHKLVF 498
           L  L+LP I Y++ A + F   L+F
Sbjct: 204 LHLLFLPCIYYFYSAFIIFTIHLLF 228


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 393 WMDMGYRRVGTIIA 434
           W+D+ Y R+G I A
Sbjct: 398 WLDLSYNRLGQIDA 411


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 608 LEKWEINLREKKMRNGIYKISFNYGL 685
           LE W+++L  +    G+  I   YGL
Sbjct: 42  LEFWDLDLNAQNHPRGLTIIQNGYGL 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,228
Number of Sequences: 336
Number of extensions: 3356
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)