Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    31   0.16 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   3.4  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   7.9  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 402 MGYRRVGTIIALLLMFNLTFVILNIIQYFRSFEY*FMN-KFECGMEIVNNIRKIKFFQKQ 578
           MGY     + A +++F    ++ N+ + F+S      + + +   EI+NNIR IK +  +
Sbjct: 391 MGYSAFTGVAASVILFPCNIIVANVYKKFQSILMKNKDSRSKLMTEIINNIRSIKLYAWE 450

Query: 579 SSVTTKTIN 605
           +    K ++
Sbjct: 451 TPFLQKLLH 459


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 402 MGYRRVGTIIALLLMFNLTFVILNIIQYFRSFEY*FMN-KFECGMEIVNNIRKIKFF 569
           +GY  +       L+F    VI +I + F++ +    + + +   EI+NNIR IK +
Sbjct: 394 VGYGALSGAFVTFLLFPCNVVIASIFKRFQNRQMKNKDARSQFMTEIINNIRSIKLY 450


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 527 RHGNSKQYQEDKVFSE-TVVRDHKNYKLLEK 616
           R+GNS   +ED +FS   ++ +H N   L+K
Sbjct: 533 RNGNSLTLEEDSLFSTLRIILEHPNSSRLQK 563


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -1

Query: 614 FLIIYSFCGHGRLFLKKLY-LPDIVYYFHAALEFIHKLVFETSKILYNIKDNK 459
           F   +  C H  L L+  + LPD V YF      +H  + E +  + +I D K
Sbjct: 376 FFFEFLSCYHSFLALQFSFELPDNVIYFAPGYICLHAYLLELTISVIHISDKK 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,559
Number of Sequences: 5004
Number of extensions: 55689
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)