Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0850 - 6641980-6642163,6642791-6644091                           31   1.1  
07_03_0454 + 18364654-18366594                                         29   3.5  
01_06_1749 - 39636951-39638102                                         28   6.1  

>01_01_0850 - 6641980-6642163,6642791-6644091
          Length = 494

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -1

Query: 572 LKKLYLPDIVYYFHAALEFIHKLVFETSKILYNIKDNK 459
           LKK  + D+  Y   ALEF HKL    SK L++I  NK
Sbjct: 451 LKKT-VHDLEQYDRYALEFCHKLAARYSKQLFSIYQNK 487


>07_03_0454 + 18364654-18366594
          Length = 646

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 608 IIYSFCGHGRLFLKKLYLPDIVYYFHAALE 519
           +++  CG GR  + K  + D+ YYF   L+
Sbjct: 330 VLWRRCGFGRFMISKERMDDMTYYFKTVLK 359


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 218 AAPPFKPKRITAYGRNRRG 274
           AAPPF P RIT+Y  +  G
Sbjct: 170 AAPPFDPSRITSYAAHPNG 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,728,837
Number of Sequences: 37544
Number of extensions: 346256
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)