Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004901-1|AAH04901.1|  445|Homo sapiens fatty acid desaturase 3...    30   9.0  
AF134404-1|AAD31282.1|  445|Homo sapiens delta-6 fatty acid desa...    30   9.0  
AF128186-1|AAD41064.1|  520|Homo sapiens macrophage receptor pro...    30   9.0  
AF084560-1|AAG23122.1|  445|Homo sapiens fatty acid desaturase 3...    30   9.0  

>BC004901-1|AAH04901.1|  445|Homo sapiens fatty acid desaturase 3
           protein.
          Length = 445

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 VRAHSPPGVKWLLEPIDIYDVNKF 192
           +RAH  PG KWL+    +YD++++
Sbjct: 28  IRAHDQPGDKWLVIERRVYDISRW 51


>AF134404-1|AAD31282.1|  445|Homo sapiens delta-6 fatty acid
           desaturase protein.
          Length = 445

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 VRAHSPPGVKWLLEPIDIYDVNKF 192
           +RAH  PG KWL+    +YD++++
Sbjct: 28  IRAHDQPGDKWLVIERRVYDISRW 51


>AF128186-1|AAD41064.1|  520|Homo sapiens macrophage receptor
           protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 536 NSKQYQEDKVFSETVVRDHKNYKLLEKWEINLREKKMRNGI 658
           N K  +ED++FSET         + E +EIN+ + K RNG+
Sbjct: 3   NKKILKEDELFSETQQAAFHQIAM-EPFEINVPKPKRRNGV 42


>AF084560-1|AAG23122.1|  445|Homo sapiens fatty acid desaturase 3
           protein.
          Length = 445

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 VRAHSPPGVKWLLEPIDIYDVNKF 192
           +RAH  PG KWL+    +YD++++
Sbjct: 28  IRAHDQPGDKWLVIERRVYDISRW 51


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,190,933
Number of Sequences: 237096
Number of extensions: 1983112
Number of successful extensions: 3361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3360
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)