Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical pr...    28   7.3  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical
           protein C34D4.10 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +2

Query: 518 IRVRHGNSKQYQEDKVFSETVVRDHKNYKLLEKWEINLREKKMRNGIYKISFN 676
           I V   ++K +   K+ +ETV+ D K  K +   + N  EK+  NGIYK  F+
Sbjct: 267 IGVNKFDAKLFTASKM-NETVMLDLKAAKPMAMQDWNNLEKEDINGIYKFPFS 318


>Z68106-2|CAA92126.2|  402|Caenorhabditis elegans Hypothetical
           protein F41E7.3 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +3

Query: 378 IYSQHWMDMGYRRVGTIIALLLMFNLTFVILNIIQYFRSFEY*FMNKFECGMEIVNNIRK 557
           I S+ W +  +R +  I+ ++L F L FV++  I Y +   + F+N  +   E  ++I++
Sbjct: 192 ICSEDWSNAEFRSIFGIVVMILQFILPFVLI-AISYIKI--WLFLNSRQSMTERKSDIKR 248

Query: 558 IK 563
            K
Sbjct: 249 KK 250


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 234 LKGGAAVVTILETLELIYVVDVYGLQ*PLNTRW 136
           + G A+V  I+ ++  I+   VYG++ P+N  W
Sbjct: 213 IMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical
           protein C05C8.1b protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 130 HSPPGVKWLLEPIDIYDVNK 189
           H+ PG++W+LE  + YDV +
Sbjct: 17  HNIPGLRWVLEGFNNYDVQR 36


>AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical
           protein C05C8.1a protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 130 HSPPGVKWLLEPIDIYDVNK 189
           H+ PG++W+LE  + YDV +
Sbjct: 17  HNIPGLRWVLEGFNNYDVQR 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,771
Number of Sequences: 27780
Number of extensions: 311105
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)