Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0340
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    30   1.3  
At2g07680.1 68415.m00992 ABC transporter family protein                27   8.9  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 130 HSPPGVKWLLEPIDIYDVNKF*GLKYSYNGC 222
           H P G++WL   IDI    ++ G +Y   GC
Sbjct: 783 HVPSGIQWLHSRIDINGYEEYSGTEYRSAGC 813


>At2g07680.1 68415.m00992 ABC transporter family protein 
          Length = 1194

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 336 LKHLILKE*SAYEEIYSQHWMDMGYRRVGTIIALLL 443
           ++HL L + ++Y EI +  W+ +  + +G++I L +
Sbjct: 840 IEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFV 875


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,855
Number of Sequences: 28952
Number of extensions: 282017
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)