Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0339
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.057
UniRef50_UPI00005A1DF6 Cluster: PREDICTED: hypothetical protein ...    33   5.0  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 39.9 bits (89), Expect = 0.057
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -3

Query: 138 RWMDELTAHLVLSGYW 91
           RW+DELTAHLVLSGYW
Sbjct: 158 RWVDELTAHLVLSGYW 173


>UniRef50_UPI00005A1DF6 Cluster: PREDICTED: hypothetical protein
            XP_537754; n=1; Canis lupus familiaris|Rep: PREDICTED:
            hypothetical protein XP_537754 - Canis familiaris
          Length = 1313

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -1

Query: 374  QVQIPQFSNVPKSFNYLYANILFTLLSXDIKPSSCTIPNAIS-TSSCLNIKWTKNGN 207
            ++++ +F N+   + Y +A+I   L+  + KPSS  +P   S T SC+  K  K GN
Sbjct: 1253 RIEVWKFGNIVIEYLYHWAHICLALMELNKKPSSAILPPLPSKTDSCVYAKMPK-GN 1308


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,026,253
Number of Sequences: 1657284
Number of extensions: 8067382
Number of successful extensions: 14788
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14784
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)