Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0339
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical...    29   3.1  
AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted 2-im...    29   3.1  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL110487-13|CAB54429.2|  268|Caenorhabditis elegans Hypothetical
           protein Y39E4B.8 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 386 LQRLQVQIPQFSNVPKSFNYLYANILFTLLSXDIKPSSCTIPNAISTSSCLNIKWTKNGN 207
           L+ L+  +P  S++ K    L AN     +S D    +CT+ +       L++ WT++GN
Sbjct: 132 LKVLEPPLPSPSSLQKKSTKLMAN-----MSGDEVVLNCTVTSTDKDEEVLDVVWTRDGN 186


>AF456253-1|AAL59611.1|  268|Caenorhabditis elegans secreted
           2-immunoglobulin-domainprotein ZIG-8 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 386 LQRLQVQIPQFSNVPKSFNYLYANILFTLLSXDIKPSSCTIPNAISTSSCLNIKWTKNGN 207
           L+ L+  +P  S++ K    L AN     +S D    +CT+ +       L++ WT++GN
Sbjct: 132 LKVLEPPLPSPSSLQKKSTKLMAN-----MSGDEVVLNCTVTSTDKDEEVLDVVWTRDGN 186


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/59 (35%), Positives = 25/59 (42%)
 Frame = -1

Query: 359 QFSNVPKSFNYLYANILFTLLSXDIKPSSCTIPNAISTSSCLNIKWTKNGNCXXTPRDN 183
           QF NVP +F   + N L  L     +P S   PN  S S  +N   T NG     P  N
Sbjct: 784 QFQNVPSAFQS-FDNFL-QLFFASQQPISVPPPNPQSNSGGVNTGGTGNGTSSGGPSGN 840


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 305 TLLSXDIKPSSCTIPNAISTSSCLNIKWTKNGNCXXT 195
           T  S  +   +CT   A S++SC +  W KNG C  T
Sbjct: 192 TASSGSVTSGTCTSYAADSSTSCTS--WAKNGFCTNT 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,995,112
Number of Sequences: 27780
Number of extensions: 201063
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)