Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0339
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.29 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   2.1  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 336 VQLFICEYFIYAAVXRYQA*LLYYSECHKYKQLLKHQMDEKRQLQXNS 193
           + L +C  F++AA+  Y A    Y      K+  K + D+K+ +   S
Sbjct: 306 IYLVMCFVFVFAALLEYAAVNYTYWGARAKKKSKKKESDDKKVISSKS 353


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 371 VQIPQFSNVPKSFNYLYAN 315
           V +  F+NVPK  N  Y N
Sbjct: 515 VDLKAFNNVPKKLNMFYNN 533


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 371 VQIPQFSNVPKSFNYLYAN 315
           V +  F+NVPK  N  Y N
Sbjct: 515 VDLKAFNNVPKKLNMFYNN 533


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 517 FLRFNEIFKCFSLSRLNRERLD 452
           ++RFN++ KCF   +  +E L+
Sbjct: 113 YIRFNKLVKCFGKYKTMKEVLN 134


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 517 FLRFNEIFKCFSLSRLNRERLD 452
           ++RFN++ KCF   +  +E L+
Sbjct: 113 YIRFNKLVKCFGKYKTMKEVLN 134


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 497 YFIKPQEKRTHLNFP 541
           YF +P EKR H   P
Sbjct: 100 YFSRPFEKRLHSRLP 114


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/17 (35%), Positives = 14/17 (82%)
 Frame = -2

Query: 487 FSLSRLNRERLDYHNHV 437
           FS++++N+E  DY+ ++
Sbjct: 32  FSMTQVNKEECDYYQNL 48


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 326 LYANILFTLLSXDIKPSSCTIP 261
           L   + F LL+  I P+S T+P
Sbjct: 276 LSLTVFFLLLAEIIPPTSLTVP 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,052
Number of Sequences: 438
Number of extensions: 2267
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)