Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0339
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    31   0.72 
At5g25960.1 68418.m03088 hypothetical protein various predicted ...    27   8.9  

>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = -2

Query: 457 LDYHNHVLILR*R-AVDWRCILSADCNGCKCRYL----NSQTYLSRSIIY 323
           LD+   VL+ R    + W+C+ S+DC G  C  +    NS+T +  S IY
Sbjct: 28  LDHVGQVLLSRNHDGLSWKCLDSSDCEGTTCLGIIICENSETEIKFSDIY 77


>At5g25960.1 68418.m03088 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 296 SXDIKPSSCTIPNAISTSSCLNIKWTKNGNC 204
           S D      TIPN  S+    +  W+K+GNC
Sbjct: 74  SVDFGTKKTTIPNNGSSEQITSQIWSKSGNC 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,933,888
Number of Sequences: 28952
Number of extensions: 174679
Number of successful extensions: 318
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)