Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0338
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    91   1e-19
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    29   0.48 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.9  
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc...    25   7.8  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 41/81 (50%), Positives = 57/81 (70%)
 Frame = +2

Query: 266 NPFQIPLLNTIILIRSGVTVT*AHHSLIXXNFSQTKQRLFLTILLGFYFTILQAYEYIEA 445
           +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   QAYEY  A
Sbjct: 137 DPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGGQAYEYWNA 196

Query: 446 SFTIADRIYGSTFFIATGFHG 508
            FTI+D +YG++F+ ATG HG
Sbjct: 197 PFTISDSVYGASFYFATGLHG 217



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 20/60 (33%), Positives = 24/60 (40%)
 Frame = +3

Query: 69  RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 248
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128



 Score = 32.7 bits (71), Expect = 0.051
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 481 FFHSNRISWIHVIIGTLFLLICYIRHLNNHFSKNHHFG 594
           F+ +  +  IH+I+GT+ LL+        H +  HH G
Sbjct: 209 FYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNG 246



 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 615 Y*HFVDVV*LFLYISIY 665
           Y HF DVV LFLY++IY
Sbjct: 253 YWHFCDVVWLFLYLTIY 269


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 450 LQLLIEFMDPLFS*QQDFMDSCNNWNFISINLLYSTXXXXXXXXXXXWDL 599
           L+LLIEFMDP      +  DS N + F  + L+Y             WD+
Sbjct: 579 LRLLIEFMDPELFAHLEKTDSSNLFCFFRMLLIYFKREFDWEVLLKLWDV 628


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 472 WIHFFHSNRISWIHVII 522
           WI F H + + W+H+ I
Sbjct: 141 WIQFLHKSWMKWLHISI 157


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 538  IEIKFQLLHESMKSCCYEKSGSINSISNCK 449
            +E  F  L + + SCC E  GSIN++ N K
Sbjct: 1224 LENSFHSLVQKLLSCCTE--GSINALLNSK 1251


>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 495 QDFMDSCNNWNFISI 539
           ++ +D+C NW F+S+
Sbjct: 21  KELLDACKNWGFVSL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,372
Number of Sequences: 5004
Number of extensions: 38829
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)