Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0338
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin monoox...    31   1.0  
AC006663-1|AAF39901.1|  518|Caenorhabditis elegans Flavin-contai...    31   1.0  
Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 547 SKLIEIKFQLLHESMKSCCYEKSGSINSISNCK 449
           S L  I+  LLH +++  C+EKSG I  + N K
Sbjct: 15  SGLPSIRHALLHPNVEVTCFEKSGDIGGLWNFK 47


>AC006663-1|AAF39901.1|  518|Caenorhabditis elegans
           Flavin-containing monooxygenasefamily protein 5 protein.
          Length = 518

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 547 SKLIEIKFQLLHESMKSCCYEKSGSINSISNCK 449
           S L  I+  LLH +++  C+EKSG I  + N K
Sbjct: 15  SGLPSIRHALLHPNVEVTCFEKSGDIGGLWNFK 47


>Z78198-2|CAB01567.1|  296|Caenorhabditis elegans Hypothetical
           protein F55C5.2 protein.
          Length = 296

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 510 NP*NPVAMKKVDP*ILSAIVKEASIYSYA 424
           NP  P  +KK+DP I++ I  + S YSY+
Sbjct: 166 NPIVPWRLKKIDPKIITGITVDRSYYSYS 194


>Z81030-4|CAB02708.1|   89|Caenorhabditis elegans Hypothetical
           protein C01G10.6 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +2

Query: 23  YYRIYYYPINSLSMMTRYF---TRRNIPR*TYYF 115
           YY  YYYP N+    T Y+      N  + TYY+
Sbjct: 20  YYLYYYYPTNNNGYQTYYYYPNNNNNNGQNTYYY 53


>Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical
           protein H02I12.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 227 NWKNMTPFKITPFNPFQIPLLNTIIL 304
           N+    PF+IT F  F +PL++T+I+
Sbjct: 199 NFYRRFPFRITIFLIFMLPLISTLII 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,988,690
Number of Sequences: 27780
Number of extensions: 203201
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)