Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0337
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   9.5  

>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 403 VDPIHILCESNKELGDMPP 459
           ++  H LC +NK L   PP
Sbjct: 251 IEIAHALCLTNKNLVSKPP 269


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 613 VKCSLKLHCSTV 648
           V+C L LHC+ V
Sbjct: 327 VRCVLSLHCAAV 338


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 451 MPPQCSGEMQAC 486
           MP +C G +Q+C
Sbjct: 345 MPHRCHGNLQSC 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,293
Number of Sequences: 336
Number of extensions: 3265
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)