Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0336
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0D034 Cluster: Chromosome undetermined scaffold_329, w...    33   5.0  
UniRef50_Q6GKL8 Cluster: Putative restriction enzyme modulator p...    33   6.6  
UniRef50_P46571 Cluster: Serpentine receptor class gamma-2; n=2;...    33   6.6  

>UniRef50_A0D034 Cluster: Chromosome undetermined scaffold_329,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_329,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 784

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 506 LHCRRIVAITYNLQVSERLIQINKFKNYIVQYTNLN 399
           L+CR      +N++   ++ QI +F+NY++ YT++N
Sbjct: 270 LYCRTQNIQQHNIKFDHKIFQIKQFQNYLLVYTDVN 305


>UniRef50_Q6GKL8 Cluster: Putative restriction enzyme modulator
           protein; n=1; Staphylococcus aureus subsp. aureus
           MRSA252|Rep: Putative restriction enzyme modulator
           protein - Staphylococcus aureus (strain MRSA252)
          Length = 346

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 36  KINKNTVLLLIKFD*SLHNKII*EKILVMSNNV--IDV**IQFMSKMMQNVKKLYQFICL 209
           KI K T+  LIK D S  NKI   K+LV  NNV  +D   IQ+     +N +     I +
Sbjct: 103 KILKTTMKCLIKTDISRKNKIKLRKLLVHFNNVDTLDYRNIQWYHSFDRNNQTYKMLISI 162

Query: 210 LYMI 221
            Y+I
Sbjct: 163 CYLI 166


>UniRef50_P46571 Cluster: Serpentine receptor class gamma-2; n=2;
           Caenorhabditis|Rep: Serpentine receptor class gamma-2 -
           Caenorhabditis elegans
          Length = 327

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 208 RHMN*YNFFTFCIIFDMNCIYHTSITLFDI--TKIFSYIILLCND*SNFISN 59
           +H N Y   +F I+F M+CI   ++ + DI   ++F Y+   C   S F+ N
Sbjct: 58  KHRNLYLKQSFYILFIMSCIACFTLVVQDIFFARVFQYMTQFCEPMSEFVEN 109


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,982,963
Number of Sequences: 1657284
Number of extensions: 9452193
Number of successful extensions: 16569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16565
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)