Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0336
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   4.1  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   4.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   7.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   7.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 193 YNFFTFCIIFDMNCIYHTSITLFDITKIFSYIILLCND 80
           Y+FF   IIF M+ ++  +   F++  +F    LLC D
Sbjct: 167 YHFFCAFIIFTMHLLFCCAFIFFNMHLLF----LLCLD 200


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 527 LKQKTKVFLYYCS 565
           +K +TKV+L YCS
Sbjct: 118 VKIRTKVYLVYCS 130


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 527 LKQKTKVFLYYCS 565
           +K +TKV+L YCS
Sbjct: 114 VKIRTKVYLVYCS 126


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 159 MSKMMQNVKKLYQFICLLYMIVDDLTNS*SSY 254
           +S MMQ + K Y  +  +Y ++  LT   +SY
Sbjct: 266 LSHMMQQLGKAYSGMYSMYCLLILLTTIVASY 297


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 159 MSKMMQNVKKLYQFICLLYMIVDDLTNS*SSY 254
           +S MMQ + K Y  +  +Y ++  LT   +SY
Sbjct: 266 LSHMMQQLGKAYSGMYSMYCLLILLTTIVASY 297


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,839
Number of Sequences: 336
Number of extensions: 2957
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)