Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0336
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine rece...    33   0.19 
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    32   0.45 
Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U00049-2|AAC47052.2|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 2 protein.
          Length = 327

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 208 RHMN*YNFFTFCIIFDMNCIYHTSITLFDI--TKIFSYIILLCND*SNFISN 59
           +H N Y   +F I+F M+CI   ++ + DI   ++F Y+   C   S F+ N
Sbjct: 58  KHRNLYLKQSFYILFIMSCIACFTLVVQDIFFARVFQYMTQFCEPMSEFVEN 109


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical protein
            F26C11.3 protein.
          Length = 1317

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 355  KLILNE*IINYNQCNTVLC*KIYNPSNHS 269
            ++IL+E +I Y  C TVL   IYNPS ++
Sbjct: 1092 EIILSESLIAYKNCTTVLMQLIYNPSKNT 1120



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 355 KLILNE*IINYNQCNTVLC*KIYNPSNH 272
           ++IL+E +I Y  C TVL   IYNPS +
Sbjct: 876 EIILSESLIAYKNCTTVLMQLIYNPSTN 903



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 355  KLILNE*IINYNQCNTVLC*KIYNPSNH 272
            ++IL+E +I Y  C TVL   IYNPS +
Sbjct: 956  EIILSESLIAYKNCTTVLMQLIYNPSTN 983



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 355  KLILNE*IINYNQCNTVLC*KIYNPSNH 272
            ++IL+E +I Y  C TVL   IYNPS +
Sbjct: 1025 EIILSESLIAYKNCTTVLMQLIYNPSTN 1052



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 355 KLILNE*IINYNQCNTVLC*KIYNPSNH 272
           ++IL+E +I +  C TVL   IYNPS +
Sbjct: 789 EIILSESLIAFQNCTTVLMQLIYNPSTN 816



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 349 ILNE*IINYNQCNTVLC*KIYNPS 278
           IL+E +I Y  C TVL   IYNPS
Sbjct: 625 ILSESLIAYPNCTTVLMQLIYNPS 648



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 355 KLILNE*IINYNQCNTVLC*KIYNPSNH 272
           ++IL+E +I Y  C TVL   IY PS +
Sbjct: 706 EIILSESLIAYPNCTTVLMQLIYTPSTN 733



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 412 IPI*MFVNSKKILIE*YENKLILNE*IINYNQCNTVLC*KIYNP 281
           +P    V + K     +    +L+E +I Y  C TVL   IYNP
Sbjct: 503 LPSGEIVQAHKTFFSSFNYFQVLSESLIAYPNCTTVLMQLIYNP 546


>Z70754-4|CAA94774.1|  130|Caenorhabditis elegans Hypothetical
           protein F58E6.4 protein.
          Length = 130

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 190 NFFTFCIIFDMNCIYHTSITLF 125
           N F FC+ F+ NC +  SIT F
Sbjct: 98  NQFYFCVCFENNCNFPLSITEF 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,864
Number of Sequences: 27780
Number of extensions: 246700
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)