Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0335
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.16 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   8.2  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 139 IFTLYYIHLCFIIYRLLFNIHTLNELPIFRRY 44
           I+  YY+HL F    ++F +H L  L I+  Y
Sbjct: 258 IYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFY 289



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 136 FTLYYIHLCFIIYRLLFNIHTL 71
           F ++ +HL F    + FN+H L
Sbjct: 173 FIIFTMHLLFCCAFIFFNMHLL 194


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 QNIYTDTMSLRKRPI 249
           QNIYT   +L K+P+
Sbjct: 78  QNIYTVLTALTKKPL 92


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 205 QNIYTDTMSLRKRPI 249
           QNIYT   +L K+P+
Sbjct: 78  QNIYTVLTALTKKPL 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,405
Number of Sequences: 336
Number of extensions: 2972
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)