Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0335
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   4.9  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   4.9  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   6.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   8.6  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   8.6  

>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +3

Query: 267 DMNFHVNRTSKINVIHNQNSSDTAKLNSLFHN 362
           DMNF  N T+KIN     N S TA     FH+
Sbjct: 565 DMNFDFNDTNKIN-----NPSSTANQTRHFHS 591


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 142 NIFTLYYIHLCFIIYRLLFNI--HTLNEL 62
           N FT   I LC II+RL F    H+L EL
Sbjct: 444 NFFTWGSICLCHIIFRLAFKKQGHSLKEL 472


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 412 KNKQVLCSNRLATQRLCCPKQKRSMRHYAITKIICKGNFNYIK 540
           KN+Q+  S    +Q L   + + S+  ++  K+I KG F  ++
Sbjct: 66  KNRQLRASGEKESQFLRFRRTRLSLEDFSTIKVIGKGAFGEVR 108


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
            Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 222  YDVASETTNLKLNSPDMNFHVNRTSKINVIHNQNSSDTAKL--NSLFHNTRTEL 377
            YD   ++TNLKL S      ++       I ++ SSDT  L    L+ + R +L
Sbjct: 840  YDAIEQSTNLKLKSISQEDTIDLMRNQTFILSRISSDTILLVPKKLYPSKRKKL 893


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 216 HGYDVASETTNLKLNSPDMNFHVNRTSKINVIHNQN 323
           H YD+ S++   KL S  + +H+ RT  +N++ + N
Sbjct: 395 HEYDLKSQSMRSKLMSLHLIYHILRT-YMNILSDIN 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,957
Number of Sequences: 5004
Number of extensions: 46904
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)