Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0335
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0023 + 21605803-21605917,21606054-21606148,21606261-216063...    28   6.7  

>05_05_0023 +
           21605803-21605917,21606054-21606148,21606261-21606318,
           21606458-21606652,21607001-21607080,21607182-21607247,
           21607572-21607680,21608161-21608247,21608315-21608393,
           21608490-21608622
          Length = 338

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -1

Query: 391 FAYLTSSVLVL*NKEFSLAVSLEF*LCMTLIFDVLLTWKFISGEFNFKLVVSEAT 227
           F  +  + LV+   ++S   S+    C T+++ V+LTW  +   ++F  +V   T
Sbjct: 81  FIDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGT 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,142,948
Number of Sequences: 37544
Number of extensions: 254126
Number of successful extensions: 536
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)